PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00065.183
Common NameAMTR_s00065p00201230, LOC18447048
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 307aa    MW: 34460 Da    PI: 8.2222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00065.183genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.5e-29146205159
                                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                               ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+++a+dp+v+  tYegeH+h+
  evm_27.model.AmTr_v1.0_scaffold00065.183 146 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApRCPVKKKVQKKADDPTVLMATYEGEHTHP 205
                                               58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28141207IPR003657WRKY domain
PROSITE profilePS5081125.385141207IPR003657WRKY domain
SuperFamilySSF1182901.7E-24144207IPR003657WRKY domain
SMARTSM007745.9E-33146206IPR003657WRKY domain
PfamPF031066.3E-24147205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEAWVSTSL GLDLNTDPHR SNELNLGLEF NFMDPQKKTS TSIKDEAGDL EAELKRVRRE  60
NEKLEMMLGV MTENYITLQN KVAQLARERE EREATTTKKR KEEALHNTDS SSSEEESCKK  120
PRESAKKPCV SRAYVRTDPS DHSLVVKDGY QWRKYGQKVT RDNPSPRAYF KCSFAPRCPV  180
KKKVQKKADD PTVLMATYEG EHTHPPPTPH DLLTPLTHNL PVSLPSTALP VFSGAIPREA  240
TFPVIKPNFR KIGHGFEEKI DSVCDFPQLL IQQLASTLTK DPNFNTVLAA AITGHTSSLG  300
MSRRDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-181452071677Probable WRKY transcription factor 4
2lex_A6e-181452071677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857212.10.0probable WRKY transcription factor 40
TrEMBLU5D8820.0U5D882_AMBTC; Uncharacterized protein
STRINGERN186790.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-48WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]