PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00064.40
Common NameAMTR_s00064p00107710, LOC18448175
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 258aa    MW: 29639.2 Da    PI: 7.886
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00064.40genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.3e-19115148134
                                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                              Cs C ttkTplWR+gp+g+k+LCnaCG+++rk +
  evm_27.model.AmTr_v1.0_scaffold00064.40 115 CSDCYTTKTPLWRSGPQGPKSLCNACGIRQRKAR 148
                                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-13108159No hitNo description
SMARTSM004014.1E-22109160IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.468113164IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-15113164IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.32E-12114142No hitNo description
PROSITE patternPS003440115140IPR000679Zinc finger, GATA-type
PfamPF003205.9E-17115148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTPNYLRPHS FSSAQPHELS WRQQPNREEE EEDDQAGEKM VHPHEGHLNI TVETQALHLH  60
PHKQHQFHLL HSSKLQFQRK NCQKIEEEVE ESYEYSRKVH GSSTQTSSMG FVRTCSDCYT  120
TKTPLWRSGP QGPKSLCNAC GIRQRKARRA MAAAMQKELD KEKRMDPNFT TTTAATYYKK  180
RSKKITAQRH APKKRLCFEE EEESDYDETL AQSSPTLPPR DRDVDLRKGS AFHRVLPQDE  240
EEAAILLMAL SCGLLHG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182194KKITAQRHAPKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006858315.10.0GATA transcription factor 21
TrEMBLU5DEB90.0U5DEB9_AMBTC; Uncharacterized protein
STRINGERN197820.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-23cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]