PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00063.31 | ||||||||
Common Name | AMTR_s00063p00135060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | HB-other | ||||||||
Protein Properties | Length: 262aa MW: 30262.7 Da PI: 6.4299 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46 | 9.2e-15 | 22 | 77 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t++qle+Le+++++++yp ++ + + A k gL+ +q++vWF rR k+kk evm_27.model.AmTr_v1.0_scaffold00063.31 22 KKRKLKTPSQLEALEKFYNEHKYPPESLKVQFAWKWGLSMKQIQVWFWHRRLKDKK 77 89****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-16 | 12 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-16 | 14 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.094 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-11 | 20 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-12 | 22 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.10E-12 | 22 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MNVLESCNIA SDDDMIFHEK NKKRKLKTPS QLEALEKFYN EHKYPPESLK VQFAWKWGLS 60 MKQIQVWFWH RRLKDKKVFK EDALANGEQD TQRIRQDLVS SSKQGESKNF NLSKVESQRF 120 NDPSLTSEPR HRYVLTRTCS AMHNNASSES DSASEDRSSL QTEDHYDMKP LIYSSLHNNY 180 NEYVNMDGKV RRGYAVLDED IYFQENGEDP TISSVKRKLG RHYHEDGPML GIVFQPLPPG 240 AFDASFEDSR SGLVAKIEEE G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627223.2 | 0.0 | homeobox-DDT domain protein RLT1 isoform X3 | ||||
TrEMBL | U5D1D7 | 0.0 | U5D1D7_AMBTC; Uncharacterized protein | ||||
STRING | ERN16249 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8823 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-26 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00063.31 |
Publications ? help Back to Top | |||
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