PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00062.234 | ||||||||
Common Name | AMTR_s00062p00211520, LOC18448130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | SBP | ||||||||
Protein Properties | Length: 196aa MW: 22100.6 Da PI: 8.5953 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.6 | 2.7e-41 | 52 | 127 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 +Cq+e+C+adls ak+yhrrhkvCevhsk+p++lv+gl qrfCqqCsrfhelsefDe+krsCrrrLa+h evm_27.model.AmTr_v1.0_scaffold00062.234 52 CCQAERCRADLSAAKRYHRRHKVCEVHSKSPSTLVAGLLQRFCQQCSRFHELSEFDEAKRSCRRRLAGH 120 6******************************************************************** PP -----S- CS SBP 70 nerrrkk 76 nerrrk+ evm_27.model.AmTr_v1.0_scaffold00062.234 121 NERRRKT 127 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-33 | 45 | 114 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.154 | 50 | 127 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.24E-38 | 51 | 129 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-30 | 53 | 126 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MERREEKKGG VRVEEEEEEE EEDGDGEEET EGEEKRRVVV GGLGKKARQG PCCQAERCRA 60 DLSAAKRYHR RHKVCEVHSK SPSTLVAGLL QRFCQQCSRF HELSEFDEAK RSCRRRLAGH 120 NERRRKTPST EGGVNGRRGG AVAIAIDHNH QLKDNSNICR HNTTDQVATA AAATRMQINP 180 LQPNPTSSYK HFQIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-36 | 53 | 126 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006858268.1 | 1e-141 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q9S7A9 | 1e-38 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | U5DBY8 | 1e-140 | U5DBY8_AMBTC; Uncharacterized protein | ||||
STRING | ERN19735 | 1e-141 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 9e-38 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00062.234 |
Entrez Gene | 18448130 |