PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00061.73

Common Name

AMTR_s00061p00096800, LOC18447438

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 330aa MW: 36664.1 Da PI: 6.7006

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.73	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.9	5.6e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av qLGG+ekAtPkti+++m+vkgLtl+h+kSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00061.73 40 KPRLRWTAELHERFVDAVIQLGGPEKATPKTIMRTMNVKGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-32	37	95	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.885	37	97	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-17	39	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-24	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-25	136	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MYPGLNHHHE QVLSNEETHG SVEAPGLAID ACLVLTTDPK PRLRWTAELH ERFVDAVIQL 60 GGPEKATPKT IMRTMNVKGL TLYHLKSHLQ KYRLGKQSSK EFSNENRDAS SLSEDQATSS 120 PPSSRVMTRD MNEGYQVTEA LRVQMEVQRR LHEQMEVQRH LQLRIDAQSK YLQSMLERAC 180 KYMTDQAMTS GSNLSVEPQN NHLSFSLLSQ STPDDISETA GVQNNLEDPR AQIGDCSVDS 240 CLTSQSEYSN GGKKRSRPPC FEANSTNWGE DIVGLNMVGQ VKMVRNEGID SCASNVGLHS 300 PRLEHSGLRR PSVFLDAGPV HAKGGIYYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006857597.1	0.0	protein PHR1-LIKE 2
Swissprot	Q94A57	2e-81	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	U5D9B4	0.0	U5D9B4_AMBTC; Uncharacterized protein
STRING	ERN19064	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-84	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00061.73
Entrez Gene	18447438

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]