PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00061.21
Common NameAMTR_s00061p00045500, LOC18447384
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 412aa    MW: 46188.1 Da    PI: 6.7995
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.21genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.91e-114364101373
                                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppset 69 
                                              l++lL++cAe++s +dl+ a ++L+ ls ++sp+gd++ Rl++ f+ AL+ +l    ++  ++  +  + 
  evm_27.model.AmTr_v1.0_scaffold00061.21  36 LRQLLMTCAEHISRSDLQSAARILSLLSSNSSPYGDSTDRLVSQFVAALSLHLRLPLPQQQQQSpRHIPP 105
                                              689***********************************************99988666555444122222 PP

                                     GRAS  70 seknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.eg 138
                                              s  + +++ +++  +++++P+++fshltaNqaIl+a++g++ vHi+D++ +qG+QWp+++qa+a+R  + 
  evm_27.model.AmTr_v1.0_scaffold00061.21 106 SLVTPQTVESSFLSLNQITPFIRFSHLTANQAILDALDGHNSVHIVDLNTMQGVQWPPFMQAMAERFpHH 175
                                              22334455556667****************************************************8688 PP

                                     GRAS 139 ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkp..gEalaV 204
                                               +++RiTg g+    +  +l++tg rL++fA++lg++f+f+++++++l+dl   +++++     +EalaV
  evm_27.model.AmTr_v1.0_scaffold00061.21 176 GATIRITGTGP----DLSNLHRTGARLSRFAQTLGLDFHFHPFLSNSLSDLllLPQAIASVAqpNEALAV 241
                                              89*********....9***************************999999984456777543346****** PP

                                     GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                                              n+v++lh  l   ++l+s    +L+++k+l+P+v++++e+ea hn++sF erf+eal++ysalf+slea+
  evm_27.model.AmTr_v1.0_scaffold00061.21 242 NCVHHLHVHL--GHDLPS----LLRALKGLNPRVLTLSEREAGHNHPSFTERFSEALSHYSALFESLEAT 305
                                              ********99..566666....************************************************ PP

                                     GRAS 275 lpreseerikvErellgreivnvvacega....e.rrerhetlekWrerleeaGFkpvplsekaakqakl 339
                                              +p+ s+er+ vE++++grei+ v+a+e++    e  rerhe++e+W e+++ +GF+ v ls++a++qa+l
  evm_27.model.AmTr_v1.0_scaffold00061.21 306 VPPSSRERMAVEQVWFGREITRVLANEEEigrrErERERHERFERWAEMMRVCGFEGVVLSDFAVSQARL 375
                                              **************************9752222224799******************************* PP

                                     GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                                              llr ++ s+gy+++ ++++ +lgW+++pL+svS+W
  evm_27.model.AmTr_v1.0_scaffold00061.21 376 LLRLHYpSEGYNLHLHHDACFLGWQNHPLFSVSSW 410
                                              *********************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.53510390IPR005202Transcription factor GRAS
PfamPF035143.4E-11236410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLGSLDSSSH EDEDPSDHHL RIGFPSHGGS PPAQQLRQLL MTCAEHISRS DLQSAARILS  60
LLSSNSSPYG DSTDRLVSQF VAALSLHLRL PLPQQQQQSP RHIPPSLVTP QTVESSFLSL  120
NQITPFIRFS HLTANQAILD ALDGHNSVHI VDLNTMQGVQ WPPFMQAMAE RFPHHGATIR  180
ITGTGPDLSN LHRTGARLSR FAQTLGLDFH FHPFLSNSLS DLLLLPQAIA SVAQPNEALA  240
VNCVHHLHVH LGHDLPSLLR ALKGLNPRVL TLSEREAGHN HPSFTERFSE ALSHYSALFE  300
SLEATVPPSS RERMAVEQVW FGREITRVLA NEEEIGRRER ERERHERFER WAEMMRVCGF  360
EGVVLSDFAV SQARLLLRLH YPSEGYNLHL HHDACFLGWQ NHPLFSVSSW H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-644341026378Protein SCARECROW
5b3h_A2e-644341025377Protein SCARECROW
5b3h_D2e-644341025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857545.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-111SCL18_ARATH; Scarecrow-like protein 18
TrEMBLU5DC560.0U5DC56_AMBTC; Uncharacterized protein
STRINGERN190120.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.14e-92GRAS family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]