PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00060.63
Common NameAMTR_s00060p00124510, LOC18423789
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-X1
Protein Properties Length: 1235aa    MW: 134543 Da    PI: 8.0808
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00060.63genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.11.2e-05424441118
                                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                              CG+H C++ CH GpC +C
  evm_27.model.AmTr_v1.0_scaffold00060.63 424 CGRHYCEEACHVGPCNSC 441
                                              *****************9 PP
2zf-NF-X120.69.9e-07488505118
                                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                              CG+H+C+k CH+G+C++C
  evm_27.model.AmTr_v1.0_scaffold00060.63 488 CGNHQCEKSCHPGECGEC 505
                                              ****************** PP
3zf-NF-X121.64.7e-07546564119
                                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                              CG+H+C++ CHeG CppC+
  evm_27.model.AmTr_v1.0_scaffold00060.63 546 CGHHSCEASCHEGACPPCQ 564
                                              ******************7 PP
4zf-NF-X118.64.1e-06757773117
                                 zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                                              CG+H C ++CH+ pC+p
  evm_27.model.AmTr_v1.0_scaffold00060.63 757 CGMHACARTCHPSPCDP 773
                                              ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.06E-5254323No hitNo description
PROSITE profilePS500168.627261322IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590264319IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.14264320IPR001841Zinc finger, RING-type
CDDcd060089.63E-8353407No hitNo description
SMARTSM004380.29369387IPR000967Zinc finger, NF-X1-type
PfamPF014229.4371386IPR000967Zinc finger, NF-X1-type
CDDcd060089.19E-10414462No hitNo description
PfamPF014222.2E-4424441IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014424443IPR000967Zinc finger, NF-X1-type
CDDcd060081.05E-9478521No hitNo description
PfamPF014229.1E-4488505IPR000967Zinc finger, NF-X1-type
SMARTSM004385.7E-4488507IPR000967Zinc finger, NF-X1-type
CDDcd060083.27E-14536584No hitNo description
PfamPF014223.0E-4546563IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0031546565IPR000967Zinc finger, NF-X1-type
PfamPF0142222606617IPR000967Zinc finger, NF-X1-type
SMARTSM00438180606625IPR000967Zinc finger, NF-X1-type
CDDcd060082.66E-10637689No hitNo description
PfamPF014220.0024647664IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0068647666IPR000967Zinc finger, NF-X1-type
CDDcd060087.47E-6694742No hitNo description
SMARTSM004380.032704722IPR000967Zinc finger, NF-X1-type
PfamPF014228.1E-4757773IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0057757795IPR000967Zinc finger, NF-X1-type
CDDcd060082.59E-5793844No hitNo description
PfamPF0142284797819IPR000967Zinc finger, NF-X1-type
SMARTSM004380.35804825IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1235 aa     Download sequence    Send to blast
MSPGVGSRNE GRGWRGEWVP RTRNPNPSPS PSPSSETRNP ESVLNLISTR EYAGSDRFGF  60
GNSTGYQSSD RFDVRNLRNQ VNPDRLDARN SRNYRNSDRF DLRISRDRPN SDRSDTRNSR  120
DYQNPNQVNS GSPRIGDQTG GASAPVVYSG GSDLGFESRR VQCDSSIRGQ QRGDFARECV  180
ERGVLGVNPS GSHPRVHGNS RFRQSSGGFS KELERERRTA HGGRKDVERQ RQIEKGRSHE  240
LTISHVPQLV QEIQEKLTKG AIECMICFDV VGRSASIWSC GSCFSIFHLN CVKKWAKAPT  300
SVDLSVETTQ GSNWRCPGCQ SVQMATPEEL RYTCFCGKRR DPPSDFYLTP HSCGEPCGKA  360
LDKIPNPLCP HLCVLQCHPG PCPPCKAFAP PQPCPCGKTT LTRRCSDRKS VPSCGQPCGK  420
LLGCGRHYCE EACHVGPCNS CEFLLNALCF CGKKEHALLC GEMGIKGELG SFSGIFSCGG  480
LCRKLLSCGN HQCEKSCHPG ECGECELVPW KMKTCPCGKT QLLNTRKSCL DPILTCSKAC  540
ERTLPCGHHS CEASCHEGAC PPCQILVTQK CRCGSSSRTV PCYKTMIPSD QDGFLCDKSC  600
GHKKNCGRHR CNERCCPLSN PKGREEPYSF DWDPHLCQMI CGKKLRCGQH TCGILCHSGH  660
CPPCLETIFT DLSCACGKTS ISPPVPCGTL PPSCQHPCSV PQPCGHPASH SCHFGDCPPC  720
TVPIAKECVG GHLVLRNIPC GSRDIRCNKL CGKTRQCGMH ACARTCHPSP CDPPPSGDSL  780
SGVSGDLFSR RSCGQVCGAP RRDCRHTCAA ECHPGQLCPD QRCNFQVTIT CNCGRISSSV  840
PCSAGGSSVY VDTVYEASVA EKLPVPLQPI DSSTSSGRVP LGQRKFICDD ECAKLERKRV  900
LADAFEISTN VDALHFGESA AVSEYLTDLM RRDPKWVMAI EERCKYLVLG KGKGSPNSIR  960
VHVFCAAPKE KRDAIRQIAE RWKLSIHAAG WEPRRFLVVH VTPKSKPPAR ILGFRGGSVP  1020
AAIGQQAPPF DSSIDMDPRL VVALFDLPRD SDVSALILRF GGECELVWLN DRNALAVFGE  1080
PARAATALRR LDHGSAYIGA VVLQNVGSLS LNAWGVRDGG NFGVKANAWK KAVPETGWLE  1140
DSWGEEWSSG EASQPGWKTK EKPIMASRNP WNVLDKEVGS SQRSSLVPQI SESSQISESK  1200
AEASLSLSLS GVSHTGQSNG GEPEEVEDWE KAYE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828449.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLW1NKX50.0W1NKX5_AMBTC; Uncharacterized protein
STRINGERM958650.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]