PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00060.27 | ||||||||
Common Name | AMTR_s00060p00077350, LOC18423753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | GeBP | ||||||||
Protein Properties | Length: 226aa MW: 25817.7 Da PI: 10.4086 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 75.9 | 7.1e-24 | 33 | 128 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk 71 fqrlw +Dei +Lq l+ + +++g++ d+ fy+ v++s+ ++k ql+eK+rrLKkKf++ +++ evm_27.model.AmTr_v1.0_scaffold00060.27 33 SFQRLWCPQDEIRFLQLLLRC-TSQGMHFPRDMPLFYHRVSHSLTQSYTKPQLSEKLRRLKKKFRRTSSR 101 79*******************.678999999*************************************** PP DUF573 72 aksgk.epsfskehdqkifelskkiWg 97 +++++ ++ ++h++ f++sk++W evm_27.model.AmTr_v1.0_scaffold00060.27 102 IARDNaAVAAMTPHERRLFGMSKRLWS 128 776651567889**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-25 | 34 | 128 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MATPSDSQKL PVKRKLEPLD PPQQQPSPSA TKSFQRLWCP QDEIRFLQLL LRCTSQGMHF 60 PRDMPLFYHR VSHSLTQSYT KPQLSEKLRR LKKKFRRTSS RIARDNAAVA AMTPHERRLF 120 GMSKRLWSGD QPTVMGPAAG VWRAVAEAFE EGVEEARASI QSRYCGVVYP RASFGPLGWM 180 EFTDAAAELQ RRWGEQRVAE MEVFSQRLKL VLERVGSELN EAELI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RRLKKKFRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828413.1 | 1e-166 | uncharacterized protein LOC18423753 | ||||
TrEMBL | W1NKR9 | 1e-164 | W1NKR9_AMBTC; Uncharacterized protein | ||||
STRING | ERM95829 | 1e-165 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9800 | 9 | 12 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00060.27 |
Entrez Gene | 18423753 |
Publications ? help Back to Top | |||
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