PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00059.206
Common NameAMTR_s00059p00187950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 167aa    MW: 19690.3 Da    PI: 9.7783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00059.206genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28e-50131401128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               l+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++  +ekew+f+++rd+ky+
  evm_27.model.AmTr_v1.0_scaffold00059.206  13 LMPGFRFHPTEEELVEFYLRRKVEGKRFSV-ELITFLDLYRYDPWELPAHAVIGEKEWFFYVPRDRKYR 80 
                                               689***************************.89***************8777899************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                               +g+r+nr+t+sgyWkatg d+ +  + +++ +glkktLvfy+g+apkg++++W+m+eyrl
  evm_27.model.AmTr_v1.0_scaffold00059.206  81 NGDRPNRVTTSGYWKATGADRMIRGErSSRPIGLKKTLVFYSGKAPKGTRSSWIMNEYRL 140
                                               ***********************99857788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5411146IPR003441NAC domain
PROSITE profilePS5100551.75313157IPR003441NAC domain
PfamPF023658.4E-2615140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MNDAEKEGGE EVLMPGFRFH PTEEELVEFY LRRKVEGKRF SVELITFLDL YRYDPWELPA  60
HAVIGEKEWF FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRGERSSR PIGLKKTLVF  120
YSGKAPKGTR SSWIMNEYRL PQHETTSADH NHHIFQKQKT YKLEQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-541314017142NO APICAL MERISTEM PROTEIN
1ut4_B4e-541314017142NO APICAL MERISTEM PROTEIN
1ut7_A4e-541314017142NO APICAL MERISTEM PROTEIN
1ut7_B4e-541314017142NO APICAL MERISTEM PROTEIN
3swm_A5e-541314020145NAC domain-containing protein 19
3swm_B5e-541314020145NAC domain-containing protein 19
3swm_C5e-541314020145NAC domain-containing protein 19
3swm_D5e-541314020145NAC domain-containing protein 19
3swp_A5e-541314020145NAC domain-containing protein 19
3swp_B5e-541314020145NAC domain-containing protein 19
3swp_C5e-541314020145NAC domain-containing protein 19
3swp_D5e-541314020145NAC domain-containing protein 19
4dul_A4e-541314017142NAC domain-containing protein 19
4dul_B4e-541314017142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627776.11e-118NAC domain-containing protein 35 isoform X1
SwissprotQ9ZVP82e-87NAC35_ARATH; NAC domain-containing protein 35
TrEMBLU5CWF81e-120U5CWF8_AMBTC; Uncharacterized protein
STRINGERN176611e-121(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.18e-90NAC domain containing protein 35
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]