PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00059.125 | ||||||||
Common Name | AMTR_s00059p00141510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 188aa MW: 21766.7 Da PI: 9.9088 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 35 | 88 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq+ Le F +++++ e++++LA++lgL+ rqV vWFqNrRa++k+ evm_27.model.AmTr_v1.0_scaffold00059.125 35 KRRLSAEQVSFLEMNFGSQQKLESERKAKLASELGLDPRQVAVWFQNRRARWKN 88 5689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121 | 5.9e-39 | 34 | 124 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray 70 kkrrls+eqv++LE++F +++kLe+erK++la+eLgl+prqvavWFqnrRAR+k+kqlE+d + Lk++y evm_27.model.AmTr_v1.0_scaffold00059.125 34 KKRRLSAEQVSFLEMNFGSQQKLESERKAKLASELGLDPRQVAVWFQNRRARWKNKQLEEDLKLLKSQY 102 9******************************************************************** PP HD-ZIP_I/II 71 dalkeenerLekeveeLreelk 92 +a ++e+++Le+ev eLre+l+ evm_27.model.AmTr_v1.0_scaffold00059.125 103 EAAANEKRELEAEVMELREKLS 124 ******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.167 | 29 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-18 | 31 | 93 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 33 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.51E-15 | 34 | 90 | No hit | No description |
Pfam | PF00046 | 4.4E-17 | 35 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 36 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.3E-6 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-6 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSMLFYSGSY PSPKKDVRQR RRRKKGKGTE SELKKRRLSA EQVSFLEMNF GSQQKLESER 60 KAKLASELGL DPRQVAVWFQ NRRARWKNKQ LEEDLKLLKS QYEAAANEKR ELEAEVMELR 120 EKLSVAENEI VRLTEGSNVT SKAEKSSSPS SSLMGDFEPE QPNNFMIMPD NISINTLEWF 180 NYYANLF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 36 | RRRKKGKGTESELKKRR |
2 | 22 | 36 | RKKGKGTESELKKRR |
3 | 81 | 89 | RRARWKNKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006856113.2 | 1e-133 | homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | U5D5T9 | 1e-132 | U5D5T9_AMBTC; Uncharacterized protein | ||||
STRING | ERN17580 | 1e-133 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-39 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00059.125 |
Publications ? help Back to Top | |||
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