PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00058.80
Common NameAMTR_s00058p00118540
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 505aa    MW: 56569.7 Da    PI: 10.0583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00058.80genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-056688123
                                             EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                             y+C+ C+  F +k +L+ H +tH
  evm_27.model.AmTr_v1.0_scaffold00058.80 66 YSCKFCNLKFGSKRSLEAHVKTH 88
                                             99********************9 PP
2zf-C2H211.20.0011136155221
                                              EETTTTEEESSHHHHHHHHH CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                              +C  C+k+F++  +L  H+r
  evm_27.model.AmTr_v1.0_scaffold00058.80 136 VCAVCKKRFPSMKSLFGHMR 155
                                              6******************8 PP
3zf-C2H213.40.00023395417123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              + C++C+++F++   L  H+r+H
  evm_27.model.AmTr_v1.0_scaffold00058.80 395 HICTKCDQRFNSGQALGGHMRKH 417
                                              68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-86588No hitNo description
PROSITE profilePS5015710.1596693IPR007087Zinc finger, C2H2
SMARTSM003558.3E-46688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-8130157No hitNo description
SMARTSM003550.13135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
PfamPF139124.5E-8137159IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66395422IPR007087Zinc finger, C2H2
PfamPF139127.2E-9395417IPR007087Zinc finger, C2H2
SMARTSM003550.016395417IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280397417IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MEPFISDFSN FSGSEAKPVS IDGNQSTPNL TIRLKVGKKT DSQWEISSPE PATSQFDQVA  60
GVLGHYSCKF CNLKFGSKRS LEAHVKTHAK HSNYGLTNSD EMGLKDERER RKEGCRGEGK  120
SSTTEETTKH KQQEPVCAVC KKRFPSMKSL FGHMRCHPKR VSRRIQPPKI KNSSNGAQMK  180
STESLSYHTD GTVTEESSKV HNPLSPHSNW SVTGSRRRRN KTTSSESKDL QRQRFEGVSK  240
GMKETVRHLP MLSQSQRNLE ELGFLEKQET DKEGLESNPE KSKIVHESSS VYSPDQWKKK  300
TKLKREVRAM ETATNSGKPH EGEIISNCND AKKRKLFIGI SAANNSEEEE VTKEDAQYLG  360
IGPEISVAFL KESGNKRQKT SRISANFSPD RQGSHICTKC DQRFNSGQAL GGHMRKHFDR  420
EKHLAKLKVH HSSKMLTMGS QVELRGARKN GGGARRNGEG MEFMDLNGVM PIADEDLKFA  480
LSMLEVVPAY ADYVRSRLFM ISEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523264.10.0uncharacterized protein LOC18434752
TrEMBLW1PF060.0W1PF06_AMBTC; Uncharacterized protein
STRINGERN065530.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.16e-08C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]