PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00058.29
Common NameAMTR_s00058p00066390, LOC18434701
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 463aa    MW: 49595.4 Da    PI: 4.9506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00058.29genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-18111160255
                                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+  l+g
  evm_27.model.AmTr_v1.0_scaffold00058.29 111 RFVGVRQRP-SGRWVAEIKDtI----QKIRLWLGTFDTAEDAARAYDEAACILRG 160
                                              789******.7*********33....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.66E-29110167No hitNo description
PfamPF008474.6E-12111160IPR001471AP2/ERF domain
SMARTSM003802.2E-34111174IPR001471AP2/ERF domain
PROSITE profilePS5103219.309111168IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-18111168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-26111167IPR001471AP2/ERF domain
PRINTSPR003672.5E-7112123IPR001471AP2/ERF domain
PRINTSPR003672.5E-7134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEAEACSRAS MKRKRQEGET NSAATSSPPS MAMAMMMMNL VPDHNGAHCA NKSKVAEQSE  60
AEAIVGVGGG GAGQEEIAMA TAGGGGIPTN NHNRRVVGGP QTHHPHRSRK RFVGVRQRPS  120
GRWVAEIKDT IQKIRLWLGT FDTAEDAARA YDEAACILRG ANTRTNFWPA SSSSPSSSSP  180
ALPSRISRML RLRLLKASAN RSSNDTASSA LLDDHQPPLD SHHSHPHHHH QRWSTDPSSS  240
LSLPSSSLSS LSGPPLEGFH NTEDYFDVNT SASASNTTGR GVVAAVAEDE EEEFEGGGEE  300
MMVLDFEHQG GVVPYPFEIA QEMAGMPLEV QEEEEIPVVS QVPYSGGGGG GGGGDEVSML  360
RARFNYERNI SASLYAINGI SEFLRYTSNL RGDNSDNSQH QLQQQQQMTI EENGGDCRGA  420
ATDTDTGTSQ SSSDHQIVVE GSDVTESFLW SSLDLPPICF VT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-111111671471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844827.10.0uncharacterized protein LOC18434701
TrEMBLW1P9C20.0W1P9C2_AMBTC; Uncharacterized protein
STRINGERN065020.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]