PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00058.101

Common Name

AMTR_s00058p00137050, LOC18434773

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

HB-other

Protein Properties

Length: 1750aa MW: 197041 Da PI: 5.2685

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00058.101	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.5	1.8e-16	17	71	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ qle Le+ ++ ++yps++ r++L++kl+Lt+rq ++WF+ rR k+++ evm_27.model.AmTr_v1.0_scaffold00058.101 17 KRKMKTAVQLELLEKTYAIENYPSEALRADLSAKLDLTDRQLQMWFCHRRLKDRR 71 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-15	6	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.807	12	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-14	13	73	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-15	14	76	IPR001356	Homeobox domain
CDD	cd00086	3.91E-12	17	72	No hit	No description
Pfam	PF00046	4.2E-14	17	71	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.048	563	622	IPR018501	DDT domain
SMART	SM00571	5.1E-23	563	622	IPR018501	DDT domain
Pfam	PF02791	9.9E-17	564	619	IPR018501	DDT domain
Pfam	PF05066	1.3E-13	745	812	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-9	954	998	IPR028942	WHIM1 domain
Pfam	PF15613	2.4E-12	1137	1208	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1750 aa Download sequence Send to blast
MEKAEGEKKC PEDKTTKRKM KTAVQLELLE KTYAIENYPS EALRADLSAK LDLTDRQLQM 60 WFCHRRLKDR RKDEDGSSKR QKKAASEPSK DPDAMDSASR DDRSMASNIF VGMRKDVVPR 120 SSEMPMVKRF IDLQPSVENR VIAAIEAQLG EPLREDGPAL GVEFDPLPPG AFGSPLGQQM 180 LSGRLYDGKI YERQEAKPGM ASPPMPNMEH GFLQSSSSGK RKASGGNVHM VLPQVGTRTP 240 PLEYKFLPEQ PSVRPEAHER AATSSNSYDT PFEALGHRGP SLSTGGAFLH HSEPLASSYA 300 YPSQMVNVNR SSHGRHEHSY SQGSADYDSG QHKNSLAHFG SDPHVVPHPV LGLDNPYASS 360 DQLICADEDA SRMERKRKAE EARIAKEVEA HEKRIRKELE KQDLLKRKRE EQTRREMERY 420 DRERRKEEER LVRERQREEE RFQREQKREV VRRERFLQKE SLRAEKMRHK EELRREKEAA 480 RLKAANERAT ARRIARESME LVEDERLELM ELAASCKGLP SVVFLDMETL QNLELFKDKR 540 GAFPPRSVRL KEPFTIRPLK DSEENVANLL MVWRFLITFA DVLGLWPFTL DEFVQAFHDH 600 DSRLMGEIHI VLLKSIIKDI EDVARTPSVG TGANQNSAAN PGGGHPQIVE GAYAWGFDIR 660 SWQRHLNPLT WPEVLRQFAL SAGFGPRWKE KGPRQAYFRD ENEGHDGEDV VSTLRSGAAA 720 QNAVSMMHGK GISHLRKCRH RLTPGTVKFA AFYVLSLEGS KGLTILEVAD KIQKSGLRDL 780 TTSKTPEASI AAALSRDGNL FERTAPSTYC VRPAFRKDPA DRDAILQAAR EKIRQFQSGF 840 SDSEEAEKDL EDAEDVADEE FDIDEAEDPE IDDGLDGLQN SDKGLFSVNE EDKADQASTP 900 SEEEKSEQIK DKVGKTRGVL IDNSNDAKKA SILNGQPADE NINEQEDAEI DESHTGESWV 960 QGLTEGEYSD LSVEERLNAL VALIGVAIEG NSIRVVLEER LEAANALKRQ MWAEAQLDKR 1020 RMREEHYSKS QVSNFTGTKA EGVSNHNGAE GGQSPLPQVD NKGEEFFSAT KQDQSIDAQN 1080 VQSYLHNMLS EKNPTGQELA VGQDISPYQQ QAFAFEKSRA QLKAYIGHRA EELYVYRSLP 1140 LGQDRRRNRY WRFVTSSGSD PGCGRIFFES HDGCWRIIDT VEGFDALLAA LDIRGIRESH 1200 LYSMLQKIES SFKEVAKSNL YSMNPTEVTA IATKIESIDT ASCSVPKVEV DSPTSVVWDD 1260 SSDFWEQSKS FKIELGRTDL EKFNVLMRYE DYEKWLWTEC FNSSVVCALK YGKKRCTELL 1320 YTCEFCHNSF LAKDKHCSCC HGTFKKLDTK FSQHVADCEE KRKLELNWKL RRAFSSLSSR 1380 VRLVKAELAS IEVSIPSEAL KSHWTEAFRK SWGINLLSLT TAEELFQMLN LLEAAVVREC 1440 LSSSYETTKD LLESAKLGYP TDETSLQPGS VPLLPWIPQT TAALALRLME FDASIAYMMQ 1500 QKSHRDRESE EFVKVPSRFA VVRSIQEVDP MESPNQALHP NHEDNWTSEP RPLRGSGRGR 1560 GSGSGRGRGR GRGRSTRGGR GAGGSRAEAS GRLVGNGERA RHGRGGRKGR GRGRGRGRGL 1620 IRARVKPILE RRIEEEEEGR EVIDSKQKSE ESSSTGEEWV GEEATGEMMN YAMENEGVRS 1680 DESSEEEENE QESEDEFGDG GPKYGVGGDY DSKSEEVDGD ESGDEDEERD QNGEEEDEEE 1740 SGSISEYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1750 aa Download sequence Send to blast

MEKAEGEKKC PEDKTTKRKM KTAVQLELLE KTYAIENYPS EALRADLSAK LDLTDRQLQM  60
WFCHRRLKDR RKDEDGSSKR QKKAASEPSK DPDAMDSASR DDRSMASNIF VGMRKDVVPR  120
SSEMPMVKRF IDLQPSVENR VIAAIEAQLG EPLREDGPAL GVEFDPLPPG AFGSPLGQQM  180
LSGRLYDGKI YERQEAKPGM ASPPMPNMEH GFLQSSSSGK RKASGGNVHM VLPQVGTRTP  240
PLEYKFLPEQ PSVRPEAHER AATSSNSYDT PFEALGHRGP SLSTGGAFLH HSEPLASSYA  300
YPSQMVNVNR SSHGRHEHSY SQGSADYDSG QHKNSLAHFG SDPHVVPHPV LGLDNPYASS  360
DQLICADEDA SRMERKRKAE EARIAKEVEA HEKRIRKELE KQDLLKRKRE EQTRREMERY  420
DRERRKEEER LVRERQREEE RFQREQKREV VRRERFLQKE SLRAEKMRHK EELRREKEAA  480
RLKAANERAT ARRIARESME LVEDERLELM ELAASCKGLP SVVFLDMETL QNLELFKDKR  540
GAFPPRSVRL KEPFTIRPLK DSEENVANLL MVWRFLITFA DVLGLWPFTL DEFVQAFHDH  600
DSRLMGEIHI VLLKSIIKDI EDVARTPSVG TGANQNSAAN PGGGHPQIVE GAYAWGFDIR  660
SWQRHLNPLT WPEVLRQFAL SAGFGPRWKE KGPRQAYFRD ENEGHDGEDV VSTLRSGAAA  720
QNAVSMMHGK GISHLRKCRH RLTPGTVKFA AFYVLSLEGS KGLTILEVAD KIQKSGLRDL  780
TTSKTPEASI AAALSRDGNL FERTAPSTYC VRPAFRKDPA DRDAILQAAR EKIRQFQSGF  840
SDSEEAEKDL EDAEDVADEE FDIDEAEDPE IDDGLDGLQN SDKGLFSVNE EDKADQASTP  900
SEEEKSEQIK DKVGKTRGVL IDNSNDAKKA SILNGQPADE NINEQEDAEI DESHTGESWV  960
QGLTEGEYSD LSVEERLNAL VALIGVAIEG NSIRVVLEER LEAANALKRQ MWAEAQLDKR  1020
RMREEHYSKS QVSNFTGTKA EGVSNHNGAE GGQSPLPQVD NKGEEFFSAT KQDQSIDAQN  1080
VQSYLHNMLS EKNPTGQELA VGQDISPYQQ QAFAFEKSRA QLKAYIGHRA EELYVYRSLP  1140
LGQDRRRNRY WRFVTSSGSD PGCGRIFFES HDGCWRIIDT VEGFDALLAA LDIRGIRESH  1200
LYSMLQKIES SFKEVAKSNL YSMNPTEVTA IATKIESIDT ASCSVPKVEV DSPTSVVWDD  1260
SSDFWEQSKS FKIELGRTDL EKFNVLMRYE DYEKWLWTEC FNSSVVCALK YGKKRCTELL  1320
YTCEFCHNSF LAKDKHCSCC HGTFKKLDTK FSQHVADCEE KRKLELNWKL RRAFSSLSSR  1380
VRLVKAELAS IEVSIPSEAL KSHWTEAFRK SWGINLLSLT TAEELFQMLN LLEAAVVREC  1440
LSSSYETTKD LLESAKLGYP TDETSLQPGS VPLLPWIPQT TAALALRLME FDASIAYMMQ  1500
QKSHRDRESE EFVKVPSRFA VVRSIQEVDP MESPNQALHP NHEDNWTSEP RPLRGSGRGR  1560
GSGSGRGRGR GRGRSTRGGR GAGGSRAEAS GRLVGNGERA RHGRGGRKGR GRGRGRGRGL  1620
IRARVKPILE RRIEEEEEGR EVIDSKQKSE ESSSTGEEWV GEEATGEMMN YAMENEGVRS  1680
DESSEEEENE QESEDEFGDG GPKYGVGGDY DSKSEEVDGD ESGDEDEERD QNGEEEDEEE  1740
SGSISEYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	72	RRLKDRRKD
2	405	425	KRKREEQTRREMERYDRERRK
3	1609	1618	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006844899.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
TrEMBL	W1PFU3	0.0	W1PFU3_AMBTC; Uncharacterized protein
STRING	ERN06574	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00058.101
Entrez Gene	18434773

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]