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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | evm_27.model.AmTr_v1.0_scaffold00057.85 | ||||||||
| Common Name | AMTR_s00057p00108840 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 656aa MW: 72521.6 Da PI: 6.7999 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.8 | 1.2e-28 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++Wt eLH++Fv av+qL G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYRl
evm_27.model.AmTr_v1.0_scaffold00057.85 199 KPRVVWTIELHQQFVTAVKQL-GLEKAVPKKILEIMNVPGLTRENVASHLQKYRL 252
79*******************.********************************8 PP
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| 2 | Response_reg | 75.3 | 2.2e-25 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeiree 68
vl+vdD+ + +++l ++l+k y ev +++ +++al+ll+e++ +D++l D+ mp+mdG++ll++i e
evm_27.model.AmTr_v1.0_scaffold00057.85 19 VLVVDDDSTCLKILDKMLQKCAY-EVWTCSRASDALNLLRERKggFDIVLSDVYMPDMDGFKLLEHIGLE 87
89*********************.***************999999**********************665 PP
TTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
Response_reg 69 epklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
+lp+i+++a ++++ + + + Ga d+l Kp+ +e++ +
evm_27.model.AmTr_v1.0_scaffold00057.85 88 M-DLPVIMMSADDNPTVVMNGVVHGACDYLIKPVRMEAIKN 127
4.8********************************999976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF52172 | 1.85E-33 | 16 | 137 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 6.6E-41 | 16 | 149 | No hit | No description |
| SMART | SM00448 | 3.7E-28 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 40.865 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 1.5E-22 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 2.83E-26 | 20 | 133 | No hit | No description |
| PROSITE profile | PS51294 | 10.154 | 196 | 255 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 3.4E-20 | 196 | 256 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 5.6E-30 | 198 | 257 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.8E-25 | 199 | 252 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.0E-7 | 201 | 251 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 656 aa Download sequence Send to blast |
MSALKIEGVP PKFPIGLRVL VVDDDSTCLK ILDKMLQKCA YEVWTCSRAS DALNLLRERK 60 GGFDIVLSDV YMPDMDGFKL LEHIGLEMDL PVIMMSADDN PTVVMNGVVH GACDYLIKPV 120 RMEAIKNIWQ HVIRKKRNGL KEQSGSVEEI DKNKKGSDDV DNASSVNDGN NWKNTKRKKD 180 SKDEEDEGDE RDDSSTLKKP RVVWTIELHQ QFVTAVKQLG LEKAVPKKIL EIMNVPGLTR 240 ENVASHLQKY RLYLRRISAG SQQGNINPSI LASSDPSFAA MASLDRYEFQ AMVTSGRIPQ 300 QNFMAMQAAL GRSNSNTTVA MAHVDPRNLF KMEMQNPNSS NMLRYGQTQH LSNSQANMLQ 360 GFPSPLDSKN ISHLHQPFQQ FGNMDLQADN LSKLQSHLRP ISSPQGDPSF NPSSRAMHSE 420 NFPLMRPMSQ QPPQQLSLSL QQYQMQANSL HHQQSKGQFL TEMGHMSKLP SSSFGKQMVS 480 NDLSGHILGR NGASAIASSQ NDFLGGSNYG VFGQTPSLSY QANHQLDILN SLSLPITGGF 540 DGLGSRGFAP NFNSFNDGSF VQNGGDHFGF GSHGLSVCDQ KNGQLQDASS VGKGIFFVEG 600 EEEHRRPGIN NIQVHNNVLP GNQPKVKDES SDVDSVLLNE HFGQDYLLSG IFKQE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 6e-22 | 198 | 258 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020529843.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
| Swissprot | Q940D0 | 1e-132 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | U5D3J9 | 0.0 | U5D3J9_AMBTC; Uncharacterized protein | ||||
| STRING | ERN16820 | 0.0 | (Amborella trichopoda) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP292 | 17 | 120 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.1 | 1e-115 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.85 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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