PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00057.42 | ||||||||
Common Name | AMTR_s00057p00069720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 260aa MW: 29949.2 Da PI: 4.6378 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.6e-09 | 4 | 28 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 + W++Ia++++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00057.42 4 E-WSLIAAYLP-GRTDNEIKNYWNSHL 28 4.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.572 | 1 | 32 | IPR017930 | Myb domain |
CDD | cd00167 | 2.42E-5 | 2 | 28 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-12 | 3 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.21E-7 | 3 | 32 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-7 | 4 | 28 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MRKEWSLIAA YLPGRTDNEI KNYWNSHLSR RVDTWRRLNA SVPVLFHGKK FNGGGKRKGG 60 RGNKVGTRSK VGDFRERREK EGLNGFVSGE NEERGVRDPS YEGRKNSTLL TKSDEGLKDI 120 EGANREMGMV KHGQNEERCR EMGVVERESA ILSESLGLGL VGDVEREGEM MVSGDEGESL 180 LDLCNETLEL SEERELRVVS EDTERVRKML GLNQKECDMW SFDGDLGWGW DWDWDWDWDW 240 DWETGKMMGD EREEVFSWL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627372.1 | 1e-180 | transcription factor MYB11 | ||||
TrEMBL | U5D5R6 | 0.0 | U5D5R6_AMBTC; Uncharacterized protein | ||||
STRING | ERN16777 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-11 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.42 |
Publications ? help Back to Top | |||
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