PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00057.247

Common Name

AMTR_s00057p00206030

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

HB-other

Protein Properties

Length: 1031aa MW: 113470 Da PI: 8.6843

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.247	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.9	7.1e-08	70	126	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++s++e +e+++ +g+t +qV+ +F +R + +k evm_27.model.AmTr_v1.0_scaffold00057.247 70 KRPRDLLNPKAVKYMQAVFSIKDTLSKKETREISALCGVTVTQVREFFASQRSRVRK 126 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.685	67	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-7	69	131	IPR009057	Homeodomain-like
SMART	SM00389	1.8E-4	69	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.1E-7	70	134	IPR009057	Homeodomain-like
CDD	cd00086	7.48E-6	70	126	No hit	No description
Pfam	PF00046	2.8E-5	70	126	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence Send to blast
MERPKEVLFA ESDIGNSFES FERCLESQKE LFHYQIEQLE KIVASQCKLT GANPLSNEMA 60 AGALSIKIGK RPRDLLNPKA VKYMQAVFSI KDTLSKKETR EISALCGVTV TQVREFFASQ 120 RSRVRKLFRL TREKAMRNDN ACEASLDGPA TNSEHTIHAS EQPIEQPLED LVEQATSLNV 180 VKEDPSCSLQ GDVSPGIEPS DSNFLENIFS LMRKEETYAG QVKLMEWILQ IRNSAVLYWF 240 STKGGIVILA KWLSEAASEE QTTVLLVIFK VLCHLPFHKA LPVQISAILQ TVNKLRFYRT 300 SAHLLIILVR PSWSRINEIL SDGSWQSKID IPEEILAPTD EIPENCRKSE PPNSLKLLPN 360 ASDDSNRRLV RIIPSSQAKE RRKVLLVEQP SRKRANRNVQ VARAASEARA RPLSADDIQK 420 AKMRAVFMQG KHCNDGVHKS TQLLKPRVTK PPSLSQSRKK LNDSPLEEPD FEPTRPEVEP 480 LSRASQRIRD PESSGRVHDE PTRGSDLGSG ICGPLSDQLR QVQTAWRTPP EMRINCLWRV 540 GAGEKSKEME IQTERIRRER ETIYRFPYEI PPNPKEPWDV ELDYDDSLTL EIPSEQANSM 600 EAVEEDPQNA LEDTISQSLA ACSNKNPSDG NDPTGDTSSQ RSETNICSGS QAASINGTAG 660 PDLELLAVLL KNPELVFALT SGQGKNISNS DTVVLLDMLK ASNVGMGGTK QESGPSIPRQ 720 ALQSGGAITA SSSAKVALPE IRPSPSISPS NLGAPSHHTP PSGLLPCSHP APGAPSQHLT 780 PIPANPNQIL AHLNQIPAIS KQISVSPQRI LPMANQIPAT QTRIPVTLNQ SLATPSQNLS 840 SQGQIPGTLT PTAGKPNQDT VLSNQISATL NHIPATSSPV LPFRANPRHF PTNSNYFPAA 900 NSPPRATSNA PLLPLPSAGK TQPATGKVFP AKEGHLGFSD DFGSASRALS PIRNPGFPAK 960 TVSGIPNLPL ERGGPEFEVW SPERDPVWTV EHQWQERARG NFGRNLRPDR QWHHRGGRQR 1020 PGSRRRDRRF *

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence Send to blast

MERPKEVLFA ESDIGNSFES FERCLESQKE LFHYQIEQLE KIVASQCKLT GANPLSNEMA  60
AGALSIKIGK RPRDLLNPKA VKYMQAVFSI KDTLSKKETR EISALCGVTV TQVREFFASQ  120
RSRVRKLFRL TREKAMRNDN ACEASLDGPA TNSEHTIHAS EQPIEQPLED LVEQATSLNV  180
VKEDPSCSLQ GDVSPGIEPS DSNFLENIFS LMRKEETYAG QVKLMEWILQ IRNSAVLYWF  240
STKGGIVILA KWLSEAASEE QTTVLLVIFK VLCHLPFHKA LPVQISAILQ TVNKLRFYRT  300
SAHLLIILVR PSWSRINEIL SDGSWQSKID IPEEILAPTD EIPENCRKSE PPNSLKLLPN  360
ASDDSNRRLV RIIPSSQAKE RRKVLLVEQP SRKRANRNVQ VARAASEARA RPLSADDIQK  420
AKMRAVFMQG KHCNDGVHKS TQLLKPRVTK PPSLSQSRKK LNDSPLEEPD FEPTRPEVEP  480
LSRASQRIRD PESSGRVHDE PTRGSDLGSG ICGPLSDQLR QVQTAWRTPP EMRINCLWRV  540
GAGEKSKEME IQTERIRRER ETIYRFPYEI PPNPKEPWDV ELDYDDSLTL EIPSEQANSM  600
EAVEEDPQNA LEDTISQSLA ACSNKNPSDG NDPTGDTSSQ RSETNICSGS QAASINGTAG  660
PDLELLAVLL KNPELVFALT SGQGKNISNS DTVVLLDMLK ASNVGMGGTK QESGPSIPRQ  720
ALQSGGAITA SSSAKVALPE IRPSPSISPS NLGAPSHHTP PSGLLPCSHP APGAPSQHLT  780
PIPANPNQIL AHLNQIPAIS KQISVSPQRI LPMANQIPAT QTRIPVTLNQ SLATPSQNLS  840
SQGQIPGTLT PTAGKPNQDT VLSNQISATL NHIPATSSPV LPFRANPRHF PTNSNYFPAA  900
NSPPRATSNA PLLPLPSAGK TQPATGKVFP AKEGHLGFSD DFGSASRALS PIRNPGFPAK  960
TVSGIPNLPL ERGGPEFEVW SPERDPVWTV EHQWQERARG NFGRNLRPDR QWHHRGGRQR  1020
PGSRRRDRRF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011627478.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
TrEMBL	U5D6D6	0.0	U5D6D6_AMBTC; Uncharacterized protein
STRING	ERN16982	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4121	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-155	HB-other family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00057.247

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]