PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00057.218 | ||||||||
Common Name | AMTR_s00057p00193570, LOC18445285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C3H | ||||||||
Protein Properties | Length: 459aa MW: 48842.4 Da PI: 7.7535 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.5 | 4e-12 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG+C+yG++C+++H+ evm_27.model.AmTr_v1.0_scaffold00057.218 48 PGEADCMFYMKTGFCRYGANCRYNHP 73 57899********************8 PP | |||||||
2 | zf-CCCH | 32.7 | 1.3e-10 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f +tGtCk+G++Ck++H++ evm_27.model.AmTr_v1.0_scaffold00057.218 96 QPTCQYFIKTGTCKFGATCKYHHPR 120 689********************96 PP | |||||||
3 | zf-CCCH | 34.5 | 3.3e-11 | 143 | 166 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++ +tG+Ck+G++CkF+H++ evm_27.model.AmTr_v1.0_scaffold00057.218 143 KECSYYVKTGQCKFGPTCKFHHPQ 166 68********************97 PP | |||||||
4 | zf-CCCH | 39.8 | 7.6e-13 | 294 | 320 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG CkyG++C+++H+p evm_27.model.AmTr_v1.0_scaffold00057.218 294 PGQPECQFYMRTGDCKYGSTCRYHHPP 320 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.1 | 9.6e-11 | 343 | 365 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+f+a+ G Ck+G++CkF H+ evm_27.model.AmTr_v1.0_scaffold00057.218 343 PTCSFYAQHGVCKFGPTCKFDHP 365 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-7 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 143 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 293 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.032 | 293 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-10 | 295 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 297 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 299 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.173 | 339 | 367 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 339 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-8 | 343 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 343 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 345 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEYYGKNPTL EGSSIDPSPE WNEVGLEESM WRLSLGRESG GEYYPERPGE ADCMFYMKTG 60 FCRYGANCRY NHPHDRNPAA DVLQTGGGEY PERVGQPTCQ YFIKTGTCKF GATCKYHHPR 120 YGGGLMSPVG LNILGYPLRP GDKECSYYVK TGQCKFGPTC KFHHPQPVNT SLQTTPAPQF 180 YPTVHSPSQP SPQQYGGGMA SWQVARSPFL PGSYVQGPYS PVILHPGVVP LPGWSAYPPP 240 VTPVASPGAQ QPVGTGSLYG LSPTATPYPG FFSPVSSSVA GPSGTKENTF PERPGQPECQ 300 FYMRTGDCKY GSTCRYHHPP DRIVPQTNCT LSPIGFPLRP GAPTCSFYAQ HGVCKFGPTC 360 KFDHPLGSLS YSPSASSLAD MPVAPYPVGS SLATLAPSSS STDLSGAQKS SENPSSSSMG 420 SSPLKGTQSL QTQTSAQSST PSSSSSTTGH GTENPSSI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855486.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Swissprot | Q84W91 | 1e-160 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | U5D978 | 0.0 | U5D978_AMBTC; Uncharacterized protein | ||||
STRING | ERN16953 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2865 | 11 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-147 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.218 |
Entrez Gene | 18445285 |
Publications ? help Back to Top | |||
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