PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00057.212 | ||||||||
Common Name | AMTR_s00057p00191330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 494aa MW: 53519.3 Da PI: 6.113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g evm_27.model.AmTr_v1.0_scaffold00057.212 60 KFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAALSIKG 109 688******.**********965...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.404 | 60 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.11E-30 | 60 | 119 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-28 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-36 | 60 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 60 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.2E-8 | 61 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 62 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-8 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MDEHATGSFK ITQELNPSPP SSSSLLTDFT WRPNNTIINN NNNNRKRSPT EPGSNTSSNK 60 FLGVRRRPWG RYAAEIRDPS TKERHWLGTF DTAEEAALAY DRAALSIKGS DARTNFNYHS 120 PPLHVPAIPQ PHPLSLSAID TSAEPMPCQH LLAQLGHASQ YPLQLLNLSN TLAQSDLTTS 180 APAGIRPTNP SNPHQLLFPQ SGRAMSAGTT HSRMSPHQQS IMVGSTTCGE SLIESGHWEG 240 PIQGGTHLSS HTQWDSAKWS QGLLASEYSG FASLVGNKED SGYLGSIVHD GFSSKPTSFS 300 HENINFSEKS AIFSHQRSNS SQGPITFSNE RSDPSKKPTT FSPENTDFFE KSTKFSHESS 360 TFSEKTTTSS HERRRPSISS HEKSKPNFLN RETNQSSGAV GVHCVASANV GECSSEHGAW 420 NGTSTDGFSF NGGFDDYDED GSGVMGIGEH GSSSLWGIEE EEYNALLFGC MPQVSDTLCQ 480 SLSDVFDLGS SQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 61 | 116 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | U5D697 | 0.0 | U5D697_AMBTC; Uncharacterized protein | ||||
STRING | ERN16947 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 1e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.212 |
Publications ? help Back to Top | |||
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