PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00057.100 | ||||||||
Common Name | AMTR_s00057p00122250, LOC18445163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 302aa MW: 33433.7 Da PI: 8.463 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3.1e-07 | 244 | 287 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ Ed l++a k ++++ +W+++a+ ++ g++ +c r+ evm_27.model.AmTr_v1.0_scaffold00057.100 244 WSSGEDIALLNALKAFPKEtpmRWEKVAASVP-GKSKASCMKRLA 287 ********************************.********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.519 | 151 | 192 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.016 | 155 | 208 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.6E-5 | 156 | 195 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.004 | 236 | 290 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 236 | 293 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-4 | 240 | 292 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.29E-9 | 241 | 288 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.65E-5 | 244 | 285 | No hit | No description |
Pfam | PF00249 | 4.8E-6 | 244 | 286 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEYIDEESKP RFQLQSQNSS PQSQPTHRIN KTHAAICISI GILLFSYSIL LQNGASQLVM 60 VWIAFSLVVG PFAPISVTGG DIRVGVGELL EEEPDHQEVV ESKRKPATIR AKSRRSEPAA 120 ADFQSFSSSS NGNQEKMTNV SEKLGDNGDQ KENQCEKEWN DSDLDLLRKQ MAKHPPGKPG 180 RWDLIAQAFN GKHGLESIIK MAKSLSEKKP GGSDSYAQFL KQRKPLDDRV SDTERKEESE 240 NAVWSSGEDI ALLNALKAFP KETPMRWEKV AASVPGKSKA SCMKRLAELR KDFRSSKASD 300 T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855368.1 | 0.0 | dnaJ homolog subfamily C member 2 | ||||
Swissprot | Q9ASQ2 | 8e-64 | MAMYB_ARATH; Transcription factor MAMYB | ||||
TrEMBL | U5D3L3 | 0.0 | U5D3L3_AMBTC; Uncharacterized protein | ||||
STRING | ERN16835 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8142 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45420.1 | 3e-65 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.100 |
Entrez Gene | 18445163 |
Publications ? help Back to Top | |||
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