PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00056.57
Common NameAMTR_s00056p00080350, LOC18443388
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 323aa    MW: 35541.5 Da    PI: 5.5779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00056.57genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-18225259135
                                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                              C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  evm_27.model.AmTr_v1.0_scaffold00056.57 225 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 259
                                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-7812308IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.519219255IPR000679Zinc finger, GATA-type
SMARTSM004014.5E-17219269IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-15221283No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14223257IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.84E-14224271No hitNo description
PfamPF003206.6E-16225259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEAPDYPYSG VYMFDKKYSE YNKNGDLFHI EDLLDFSNEE ITGGLDENAG NLTHSGDSST  60
VTVGEVAGKS SFEGNFGELC GPESDPFGRN FGDGQDPGEL CVPCDDLAQL EWLSNFVEES  120
FSSEDLQNIH LPNLHISKIP PTGISPTRPE NPNLPANFCP NLLPEITVPA KARSKRSRAP  180
ALNWASSIIS PSSIISPSNS SSNEQVGSPE SGFPSNVQST NGRKCLHCQT DKTPQWRTGP  240
MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH RKVMELRRQK EVRRTQQQLM  300
QNQVYGGDEF LIHPGQDYHH LL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853640.10.0GATA transcription factor 9
TrEMBLU5D1480.0U5D148_AMBTC; GATA transcription factor
STRINGERN151070.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-66GATA transcription factor 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]