PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00056.41
Common NameAMTR_s00056p00064760, LOC18443370
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 298aa    MW: 32737.2 Da    PI: 6.5123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00056.41genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1861111155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  evm_27.model.AmTr_v1.0_scaffold00056.41  61 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 111
                                              68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-1361111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3162120IPR001471AP2/ERF domain
SMARTSM003806.3E-3662125IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2162120IPR016177DNA-binding domain
PROSITE profilePS5103223.26162119IPR001471AP2/ERF domain
PRINTSPR003673.4E-106374IPR001471AP2/ERF domain
CDDcd000181.31E-3263121No hitNo description
PRINTSPR003673.4E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MADPPNWEAD TTSTSNPSSP SSLCSSSSTP QQNKHKAAQA RGQGQGDEAR RRRKTLEGEH  60
PVYRGVRMRN WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GPNTTLNFPE  120
LAASFPRPST LSPRDIQAAA AKAAAMFSSS CPDSNTNTNI NHSTGSIANS SIESSFSPER  180
TITSNILTPN NMSKNSFSTN NNNNAKACQI KVLDEFQSIT TSEITQLPQL SGSYYHYSPS  240
SHLSYQLEPD YYDYVFDMPN FFTFSEPVPL LEPGLACQVP PPPESDSFGV DAFLWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17591191172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020528602.10.0ethylene-responsive transcription factor ERF037
TrEMBLU5CPK50.0U5CPK5_AMBTC; Uncharacterized protein
STRINGERN150910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-48ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]