PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00056.223

Common Name

AMTR_s00056p00222190

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

HRT-like

Protein Properties

Length: 317aa MW: 35467.1 Da PI: 8.1566

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00056.223	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	28.8	2e-09	263	278	16	31
HRT-like 16 PvkgRKRCeeHKGmRi 31 Pv+gRKRC eHKGmR+ evm_27.model.AmTr_v1.0_scaffold00056.223 263 PVEGRKRCSEHKGMRV 278 ***************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MVFGSETHRI RREEQSRTKL DHLFSKWEIL IGPSDWGNYL LGKEGTEKYR IHNLPLSSSC 60 PGIYELGVAP ISTGLGRTIR KIDPSAIVVA YIGHADNVRT RLQHYGRSGS HLELVDPFVL 120 PDNGKPSEPV TTTNQCLEKR PGLFREAFSR GFYIVFRWAP MTTKREAGLA ESRLLSNFDY 180 AWNKGANGAR RPADILAKLD RTHSQSALLA CLSRKLGHLK WNGITKKCIG IDINAGKLED 240 EGSSGTITFE VSDTCEKESR GCPVEGRKRC SEHKGMRVNA SKLEDEGSYV SAERHFESCY 300 WLEESPCAFQ IMEETN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626787.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
Refseq	XP_020528740.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	U5D4J1	0.0	U5D4J1_AMBTC; Uncharacterized protein
STRING	ERN15273	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5248	14	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-59	effector of transcription2

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00056.223

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]