PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00056.195
Common NameAMTR_s00056p00204920, LOC18443530
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 275aa    MW: 30664.3 Da    PI: 8.6344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00056.195genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171462148
                                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                              rg+W++eEd  l ++v+++G+g +W + +++ g++R++k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00056.195 14 RGPWSPEEDNALRNYVQRYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                                              89*********************************************97 PP
2Myb_DNA-binding45.32.1e-1469111246
                                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               g +T+eEd +++ + k  G++ W+ Ia+ ++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00056.195  69 GGFTEEEDNIIISLYKTIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                                               569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.257962IPR017930Myb domain
SuperFamilySSF466892.68E-2911109IPR009057Homeodomain-like
SMARTSM007174.0E-121364IPR001005SANT/Myb domain
PfamPF002498.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241569IPR009057Homeodomain-like
CDDcd001675.02E-91662No hitNo description
PROSITE profilePS5129422.14163117IPR017930Myb domain
SMARTSM007176.6E-1467115IPR001005SANT/Myb domain
PfamPF002493.6E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2470117IPR009057Homeodomain-like
CDDcd001671.04E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDNALRNYVQ RYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIII SLYKTIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLFGS  120
KPTTPQTSKT TTLSSPSSCS SSSSHSKIPL KKDTTFSHYT DSLSLEKPTS ISPTEIPNYA  180
YNVDPQRLVT ETMSFAPSHL TEYEVSTASY SQESDYIYWA LDGATNGAIE ESLLMDYDFI  240
NGLLAHEKKP LEVGSVPHSF GSQQGFTYQS LKYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853778.10.0transcription factor RAX2
TrEMBLU5CZ410.0U5CZ41_AMBTC; Uncharacterized protein
STRINGERN152450.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76myb domain protein 36
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]