PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00053.9 | ||||||||
Common Name | AMTR_s00053p00025460, LOC18433179 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WRKY | ||||||||
Protein Properties | Length: 324aa MW: 35125.6 Da PI: 5.8 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 152 | 210 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp v++itY++eHnh+ evm_27.model.AmTr_v1.0_scaffold00053.9 152 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRSDPGVFVITYTSEHNHP 210 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-31 | 141 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.614 | 146 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 149 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 151 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 153 | 210 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MERGGGGLCY WASSADDWDL QAVVRGCTSE RVPRHPWFDG GAISIESSST STTTTAALLV 60 DQAVNGDCDG DFLSAFPDLV SSLPAMELEE SYKPFYSNNS SCEAPLLQKQ KQKQARGLSV 120 SGASHTHLRR SKRSKSQLRR VVCQVPAEGL PSDMWAWRKY GQKPIKGSPY PRGYYRCSSS 180 KGCSARKQVE RSRSDPGVFV ITYTSEHNHP LPTHRNSLAG STRNKPEASP TPADTTTSSQ 240 PPPTHNHPKP ASSPPHLSPT TPLNMAANSN DLQKHQDEEE DEEGEVEEDD LFLELEELGQ 300 SGGGGATASA FAETFVGDFP WLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-22 | 134 | 213 | 1 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-22 | 134 | 213 | 1 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006843337.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | W1P532 | 0.0 | W1P532_AMBTC; Uncharacterized protein | ||||
STRING | ERN05012 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-49 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00053.9 |
Entrez Gene | 18433179 |
Publications ? help Back to Top | |||
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