PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00053.170 | ||||||||
Common Name | AMTR_s00053p00216970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 161aa MW: 17823.1 Da PI: 9.3407 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 38.1 | 3.1e-12 | 120 | 142 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK vk+s++prs evm_27.model.AmTr_v1.0_scaffold00053.170 120 LDDGYRWRKYGQKAVKNSNYPRS 142 59********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-12 | 106 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-10 | 113 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.553 | 115 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-4 | 120 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-8 | 121 | 142 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MGEEEQNGLV LHANHNLLYS HQNPPLISLN PSLTSPQLQT LNPFPEPNWN ALLAGTLGLG 60 SSQDDGKQIE LSNNHHLSGG GYGGTVIEDN HGIKEKGRAK LRKMSRPRFA FQTRTPNDIL 120 DDGYRWRKYG QKAVKNSNYP RSISLTYAVI NDLLLSLLHI * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020522200.1 | 1e-102 | probable WRKY transcription factor 43 | ||||
TrEMBL | W1PB75 | 1e-113 | W1PB75_AMBTC; Uncharacterized protein | ||||
STRING | ERN05173 | 1e-114 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46130.1 | 5e-18 | WRKY DNA-binding protein 43 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00053.170 |
Publications ? help Back to Top | |||
---|---|---|---|
|