PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00053.169 | ||||||||
Common Name | AMTR_s00053p00216880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WRKY | ||||||||
Protein Properties | Length: 68aa MW: 7898.3 Da PI: 9.7093 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 58.1 | 1.8e-18 | 8 | 46 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt+++C+vkk+v+r ++d+++v++tYeg H+h+ evm_27.model.AmTr_v1.0_scaffold00053.169 8 NRSYYRCTHHTCSVKKQVQRLSKDTSIVVTTYEGVHTHP 46 6*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.5E-9 | 6 | 47 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-15 | 7 | 47 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.5E-16 | 7 | 46 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-14 | 7 | 46 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.193 | 9 | 48 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MTVMMMSNRS YYRCTHHTCS VKKQVQRLSK DTSIVVTTYE GVHTHPCERL MESLSPLLKQ 60 MQFLTKF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020522200.1 | 7e-37 | probable WRKY transcription factor 43 | ||||
Swissprot | Q9FFS3 | 1e-30 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | W1P5P6 | 8e-42 | W1P5P6_AMBTC; Uncharacterized protein | ||||
STRING | ERN05172 | 1e-42 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 5e-33 | WRKY DNA-binding protein 24 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00053.169 |
Publications ? help Back to Top | |||
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