PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00052.100

Common Name

AMTR_s00052p00202630

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

S1Fa-like

Protein Properties

Length: 73aa MW: 8015.69 Da PI: 10.8771

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00052.100	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	128.4	2.1e-40	8	72	6	70
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++kGlnPG+ivl+vv gl+l+flvgny+ly+yaqknlP +kkkPvskkk+kre+lkqGv++PGe evm_27.model.AmTr_v1.0_scaffold00052.100 8 SDSKGLNPGVIVLVVVVGLILTFLVGNYALYIYAQKNLPHKKKKPVSKKKMKRERLKQGVSAPGE 72 689*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.9E-41	8	72	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MAWYGKMSDS KGLNPGVIVL VVVVGLILTF LVGNYALYIY AQKNLPHKKK KPVSKKKMKR 60 ERLKQGVSAP GE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011627265.1	9e-40	DNA-binding protein S1FA
Refseq	XP_020529565.1	9e-40	DNA-binding protein S1FA
Refseq	XP_020529566.1	9e-40	DNA-binding protein S1FA
Swissprot	Q7XLX6	4e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	U5D4W1	1e-43	U5D4W1_AMBTC; Uncharacterized protein
STRING	ERN16457	2e-44	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5095	13	22

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00052.100

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]