PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00051.83 | ||||||||
Common Name | AMTR_s00051p00204250, LOC18445009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 21450 Da PI: 9.4844 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 2.8e-16 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r + +g+WvAeIr+p++ r r++lg++ t+ Aa a++ a +l+g evm_27.model.AmTr_v1.0_scaffold00051.83 52 QYRGIRMRT-WGKWVAEIREPKK---RSRIWLGSYSTPIAAAMAYDTAVFYLRG 101 69****998.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 51 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-19 | 52 | 109 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.60E-24 | 52 | 110 | No hit | No description |
Pfam | PF00847 | 2.0E-9 | 52 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-34 | 52 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.377 | 52 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 91 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDEENSCSAS ASASVWKESE SMMELQQQKH KGKKRSSSLG KEAVKNESER RQYRGIRMRT 60 WGKWVAEIRE PKKRSRIWLG SYSTPIAAAM AYDTAVFYLR GPSAQRNFPE FATEEDCLSD 120 MSADSIRKKA TEVGARVDAL QQNRTHISRR PNLNQEPPPE SEDWFASCAS SSERSQRLRI 180 KELREDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 51 | 109 | 4 | 63 | ATERF1 |
3gcc_A | 4e-15 | 51 | 109 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855217.1 | 1e-136 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 4e-43 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | U5D2N2 | 1e-135 | U5D2N2_AMBTC; Uncharacterized protein | ||||
STRING | ERN16684 | 1e-136 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 4e-45 | related to AP2 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00051.83 |
Entrez Gene | 18445009 |
Publications ? help Back to Top | |||
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