PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00050.92
Common NameAMTR_s00050p00225320
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27881.1 Da    PI: 4.6373
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00050.92genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.31.3e-10954145
                                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E.EEEEEE-TTSE CS
                                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae.vaviifsstgk 45
                                             k ienk  r+vtfskRr g+  K + L++  +ae +av+ fs+ gk
  evm_27.model.AmTr_v1.0_scaffold00050.92  9 KYIENKNARHVTFSKRRLGLYRKVFDLCIDGGAEcAAVLTFSEAGK 54
                                             579******************************94579999*9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-15161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.283162IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-18281IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-131158IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRRAIEIKY IENKNARHVT FSKRRLGLYR KVFDLCIDGG AECAAVLTFS EAGKPFPFLY  60
PHTDSVLQRF IQTQDPNNQQ ASSSSSQPTG RVHDPLMEEY YGLVKELEAE EALSFALNQR  120
TPKFGSGSGS RSGFWWEADM TRMGQQELKR WAIALETLRE MVARRAFEVQ ASVNPIGEGS  180
THMAQVCCSP VEHSSPLEVP EDSSEVGSGA VEVGGSFEYE EEEEEKRWGV AAEEVPAWWC  240
WSDCTPPTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006851363.20.0agamous-like MADS-box protein AGL61
TrEMBLW1PY190.0W1PY19_AMBTC; Uncharacterized protein
STRINGERN129440.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-16AGAMOUS-like 29
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]