PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00049.47
Common NameAMTR_s00049p00074250, LOC18441863
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 257aa    MW: 29432.2 Da    PI: 5.7272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00049.47genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141461148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             rg+W +eEd++l + +   G ++W+++++  g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00049.47 14 RGPWNAEEDKKLMNFILNNGQNCWRLVPKLAGLLRCGKSCRLRWTNYL 61
                                             89******************************99************97 PP
2Myb_DNA-binding47.44.5e-1567110146
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              rg+ ++ E+ ++++++ +lG++ W++Ia+ ++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00049.47  67 RGALSEFEENKIIELHSRLGNR-WSRIASQLP-GRTDNEIKNHWNT 110
                                              6677888***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.482961IPR017930Myb domain
SuperFamilySSF466892.55E-2611108IPR009057Homeodomain-like
SMARTSM007178.8E-111363IPR001005SANT/Myb domain
PfamPF002497.8E-131461IPR001005SANT/Myb domain
CDDcd001674.38E-71661No hitNo description
PROSITE profilePS5129425.25562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2465117IPR009057Homeodomain-like
SMARTSM007171.0E-1266114IPR001005SANT/Myb domain
PfamPF002491.2E-1367110IPR001005SANT/Myb domain
CDDcd001675.97E-974110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWNAE EDKKLMNFIL NNGQNCWRLV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGAL SEFEENKIIE LHSRLGNRWS RIASQLPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPDTHKPNE TGCTKIEEET HKEEEKIQSK SEASLSKVDD TASFSPSYGG LWESWGVEEL  180
MDPVLIEPEG LVVNQEESHG QSLEQGSSAS NSCISSATLE EDMKRFWGEE CFLGERMGSF  240
YEFEEQQHCL DRFFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852150.10.0protein ODORANT1
SwissprotQ9C7U72e-75MYB20_ARATH; Transcription factor MYB20
TrEMBLW1PUB20.0W1PUB2_AMBTC; Uncharacterized protein
STRINGERN136170.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-71myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]