PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00048.153
Common NameAMTR_s00048p00192930
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YA
Protein Properties Length: 327aa    MW: 35296.2 Da    PI: 8.8225
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00048.153genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31e-32183239158
                                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                               +ep+YVNaKQy++Il+RRq+Rakle+++kl  ksrkpylheSRh hA++R Rg gGrF
  evm_27.model.AmTr_v1.0_scaffold00048.153 183 EEPVYVNAKQYHAILRRRQSRAKLEAQNKL-VKSRKPYLHESRHLHAMKRVRGRGGRF 239
                                               69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-37181242IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.14182242IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-27184239IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-24185207IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860187207IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-24216239IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MQKLTTNNSD LCSGHPTSPY TAKSSSWWNS SGIQVPKGKR CMTLNLEMDS SLSHPGSLKH  60
LETSLPEQDS CSSQSTGQSE EAAGVIGGSG GFQGSSAQPV DDETGRKGLQ TFMKAGLPAG  120
PTEYFSPLPQ MEYGHSFTHV PCPYMAASYF GGALAPYGSQ TMLTSQTLGL QQTRMLLPLD  180
WTEEPVYVNA KQYHAILRRR QSRAKLEAQN KLVKSRKPYL HESRHLHAMK RVRGRGGRFV  240
NTKNNNKSEE ANISSGAASL QAGSSASSEV LQPENANIGH GISEVSSSLV AYLPESGNGH  300
DSFGEFFRHS NFRLSVYGSD SKQNSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-22182246165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020528945.10.0nuclear transcription factor Y subunit A-5 isoform X1
RefseqXP_020528946.10.0nuclear transcription factor Y subunit A-5 isoform X1
RefseqXP_020528947.10.0nuclear transcription factor Y subunit A-5 isoform X1
RefseqXP_020528948.10.0nuclear transcription factor Y subunit A-5 isoform X1
RefseqXP_020528950.10.0nuclear transcription factor Y subunit A-5 isoform X1
RefseqXP_020528951.10.0nuclear transcription factor Y subunit A-5 isoform X1
TrEMBLU5CZP70.0U5CZP7_AMBTC; Uncharacterized protein
STRINGERN156340.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-37nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]