PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00048.151

Common Name

AMTR_s00048p00192390, LOC18443923

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 215aa MW: 23817 Da PI: 9.9168

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00048.151	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	30	84	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHe+Fv+av++LGG+ekAtPk++l++m+ kgLtl+h+kSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00048.151 30 KPRLRWTPDLHECFVDAVTKLGGPEKATPKSVLKVMGFKGLTLYHLKSHLQKYRL 84 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-32	27	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.451	27	87	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-16	30	85	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	30	85	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-9	32	83	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-21	124	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MFNSGSGEQS GANGAGNLSE RDAMLSRDPK PRLRWTPDLH ECFVDAVTKL GGPEKATPKS 60 VLKVMGFKGL TLYHLKSHLQ KYRLGKQPRR ESSTEGGKDG SLGSQKPPIL ATDSALRQNN 120 QGEIQIAQAI RYQIEVQRKL QEQLEVQKKL QMRIEAQGKY LQAILEKAQQ SLRCKEGVEE 180 ESKVGSDYQK TAAGSLDLNV NQGSLDLQIY KRYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-21	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-21	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-21	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-21	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854165.2	1e-156	myb family transcription factor PHL11 isoform X1
Refseq	XP_020528920.1	1e-156	myb family transcription factor PHL11 isoform X1
Refseq	XP_020528921.1	1e-156	myb family transcription factor PHL11 isoform X1
Refseq	XP_020528922.1	1e-156	myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	2e-57	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	U5D2K7	1e-155	U5D2K7_AMBTC; Uncharacterized protein
STRING	ERN15632	1e-156	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-48	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00048.151
Entrez Gene	18443923

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]