PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00047.126
Common NameAMTR_s00047p00199030, CRC
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family YABBY
Protein Properties Length: 197aa    MW: 22011.3 Da    PI: 9.6701
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00047.126genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY151.11e-4671466164
                                     YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeellee 74 
                                               s++++Cyv+CnfC+t+lav vP   l+ +vtv+CGhC++l           l+a   l+++   ell +
  evm_27.model.AmTr_v1.0_scaffold00047.126   7 STDHLCYVRCNFCDTLLAVGVPCRRLMDTVTVKCGHCSHLSF---------LSARPLLQNQSL-ELLST 65 
                                               79***********************************98744.........333333222222.23333 PP

                                     YABBY  75 lkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikas 143
                                               +++ ++n     +k++++s+s +     + +++ vp+vp+v++PPek+ r Psaynrf+keei+rika+
  evm_27.model.AmTr_v1.0_scaffold00047.126  66 QNFCGDN-----KKSQQSSSSSPL----TPNQQVVPKVPNVVKPPEKKHRLPSAYNRFMKEEIKRIKAG 125
                                               3333333.....333333333333....346889*********************************** PP

                                     YABBY 144 nPdishreafsaaaknWahfP 164
                                               nP+i hreafs+aaknWa f 
  evm_27.model.AmTr_v1.0_scaffold00047.126 126 NPEIPHREAFSMAAKNWARFD 146
                                               ******************994 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-528145IPR006780YABBY protein
SuperFamilySSF470957.72E-994147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-598147IPR009071High mobility group box domain
CDDcd013907.47E-6106142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDFLPGSTDH LCYVRCNFCD TLLAVGVPCR RLMDTVTVKC GHCSHLSFLS ARPLLQNQSL  60
ELLSTQNFCG DNKKSQQSSS SSPLTPNQQV VPKVPNVVKP PEKKHRLPSA YNRFMKEEIK  120
RIKAGNPEIP HREAFSMAAK NWARFDPQLL HGSTTSTQIE KQVKPNQEIH EMVTAGGRVK  180
QEDMRQLQAA ARSQIT*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8772570.0AJ877257.1 Amborella trichopoda mRNA for putative crabs claw transcription factor (CRC gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292759.11e-146protein CRABS CLAW
SwissprotQ76EJ07e-58YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLQ5CB541e-145Q5CB54_AMBTC; Putative crabs claw transcription factor
STRINGERN178441e-146(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-48YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Vinauger-Douard M,Fogliani B,Dumas C,Scutt CP
    Evidence that CRABS CLAW and TOUSLED have conserved their roles in carpel development since the ancestor of the extant angiosperms.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(12): p. 4649-54
    [PMID:15767586]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]