PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00047.125
Common NameAMTR_s00047p00197010, LOC18446191
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 406aa    MW: 44664.4 Da    PI: 8.2221
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00047.125genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.34e-4285161278
                                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
                                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                                               CqvegC++dl   k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hn
  evm_27.model.AmTr_v1.0_scaffold00047.125  85 CQVEGCNVDLRASKDYHKRHKVCDIHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHN 153
                                               ********************************************************************* PP

                                               ----S--- CS
                                       SBP  71 errrkkqa 78 
                                               errrk+q 
  evm_27.model.AmTr_v1.0_scaffold00047.125 154 ERRRKPQL 161
                                               *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.3E-3478146IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.56582159IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.05E-3983163IPR004333Transcription factor, SBP-box
PfamPF031106.8E-3285158IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEWDRKTAPF DSGDPMVFLG KAHEENPLLI SGFNGGKGGL SSSVTIDLKL GRLGDCESGF  60
DERLTKKTVV QGKRGRGGVS GVPLCQVEGC NVDLRASKDY HKRHKVCDIH SKTAKVIVKG  120
IEQRFCQQCS RFHLLAEFDD GKRSCRKRLA GHNERRRKPQ LEARLGKSGR LLPAYPGDRF  180
HGSSLITRTS FICPEIFPHA IDVGLPEPKC GNGNWFKPIK TEEDSIYNPE AHKPITNNQS  240
ILKPPFSLYN FGNYKNNPCL QDITSFDAPP TIEGLSRVVD SGCALSLLSS QSWSPSTDSS  300
GIPIAQPLIN LGGQAPSQFN VSQFSDIGHF TDKMISINSQ TSTSVGSSRF SSSGMNSMED  360
EHLGAVLVSD SSDATDFKVK TEIMFHEQQR QVKQGNELFH WYPVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3475158184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006856376.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020530441.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020530442.10.0squamosa promoter-binding-like protein 13A
TrEMBLU5DBQ60.0U5DBQ6_AMBTC; Uncharacterized protein
STRINGERN178430.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-46SBP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]