PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00046.72 | ||||||||
Common Name | AMTR_s00046p00141180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 137aa MW: 14344.3 Da PI: 4.7675 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 34.4 | 6.8e-11 | 102 | 128 | 31 | 57 |
DUF702 31 rgfdCathvkstWvpaakrrerqqqla 57 gfdCat vkstWvpaa+rrer+ + evm_27.model.AmTr_v1.0_scaffold00046.72 102 PGFDCATDVKSTWVPAARRRERHMAVV 128 59********************76554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.2E-8 | 103 | 128 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MAPRRPGEGV PDWDPGSWPP FDLRSVEAGE LCLGFNGGSA FGPSTAGCPP STKATSPFSR 60 TFPWFSSTAL STIPPLPLPA LLVGPPIPIT TSTEVQDLLQ EPGFDCATDV KSTWVPAARR 120 RERHMAVVVT GEGAAAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | U5CXD7 | 6e-92 | U5CXD7_AMBTC; Uncharacterized protein (Fragment) | ||||
STRING | ERN17996 | 1e-92 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.3 | 5e-07 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00046.72 |
Publications ? help Back to Top | |||
---|---|---|---|
|