PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.191
Common NameAMTR_s00045p00165950, LOC18430215
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 307aa    MW: 33981.4 Da    PI: 6.0723
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.191genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30121179259
                                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                               +D ++WrKYGqK++kgs++pr+YYrC++a gC +kk+ver+++d ++++itY+++Hnh+
  evm_27.model.AmTr_v1.0_scaffold00045.191 121 SDFWSWRKYGQKPIKGSPYPRGYYRCSTAkGCLAKKQVERCRTDASMLIITYSSTHNHP 179
                                               699***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-31115181IPR003657WRKY domain
SuperFamilySSF1182906.93E-26119181IPR003657WRKY domain
SMARTSM007742.7E-36120180IPR003657WRKY domain
PROSITE profilePS5081131.031121181IPR003657WRKY domain
PfamPF031064.5E-25122179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDVCSSKPSL QTHDQEIQAS RPHSKDPKPE LQIPKSELLK AAKPELQAAE SELYTANPEL  60
QAAKLELYIK PELYSAGPEL LSAKPESSPS SKRRKVAPKT VVTVRIAAAA AGSQKGDCPP  120
SDFWSWRKYG QKPIKGSPYP RGYYRCSTAK GCLAKKQVER CRTDASMLII TYSSTHNHPL  180
PSQQATNPPL KKPQENLARN PVPVSPNLAK TLESQTVGEA PIDDFFSFQS PMRSPEDLNQ  240
ENPSPLTEEP VFEEPLSYPH IMAFSEPKTE EGNEFFDELE ELPISSSFAG PMRNSFFDER  300
ILILPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-211211821780Disease resistance protein RRS1
5w3x_D2e-211211821780Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840437.10.0probable WRKY transcription factor 65
TrEMBLW1NWV30.0W1NWV3_AMBTC; Uncharacterized protein
STRINGERN021120.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-34WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]