PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.18
Common NameAMTR_s00045p00040070, LOC18430037
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 108aa    MW: 12286.5 Da    PI: 8.5085
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.18genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.67e-091056245
                                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                              +WT+   + + +a + + ++   +W+ +a+++g g++++++k ++q
  evm_27.model.AmTr_v1.0_scaffold00045.18 10 SPWTQRQNKEFERALAIFDKDtpeRWDNVASMVGGGKSAEEVKRHYQ 56
                                             58********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.046763IPR017884SANT domain
SMARTSM007175.6E-8861IPR001005SANT/Myb domain
SuperFamilySSF466897.71E-121067IPR009057Homeodomain-like
CDDcd001671.78E-61159No hitNo description
PfamPF002497.8E-71156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-41263IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGSRSSSSSS PWTQRQNKEF ERALAIFDKD TPERWDNVAS MVGGGKSAEE VKRHYQILLE  60
DLKCIESGHI PFPNYRQPPR NNMDTPHHQH QQQQHFTNGK SSSAYTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-29576474RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840264.14e-77protein RADIALIS-like 6
RefseqXP_020520569.14e-77protein RADIALIS-like 6
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLW1P2Q78e-76W1P2Q7_AMBTC; Uncharacterized protein
STRINGERN019391e-76(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-30RAD-like 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]