PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00045.155 | ||||||||
Common Name | AMTR_s00045p00146180, LOC18430178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 439aa MW: 49461.3 Da PI: 7.3963 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00045.155 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 2e-13 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ ++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ evm_27.model.AmTr_v1.0_scaffold00045.155 67 RGTFSQQEENMIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*******************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.116 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.437 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.4E-12 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.56E-8 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENMIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPTTHKPLS EVENGEEKTQ NQNEKASGSN ELKLLAPSSI PETEVKPNLK PPLMTNPVED 180 LTPKLKTTST NTGPTNSLSK EFFLERFINS HESSSCRGSS DCSPYFPLNP VNYGSNCTNQ 240 ANPMNLSINP TPNPWFNQNC RPLTDISPVT SSLMDSPACK RTPIIQPSPN FKPSINQEFM 300 ADKYWEAGRN CNNSSNSGSS SSIEFQSTNT TSLFENSVFS WGSADGRVDS LDISSEKNAP 360 IRLEGETEDV KWCDYLHLPL VHQISGVIQN QNQPLYSEIK SEDQFSLSSW HQDQSQQLQS 420 NDIFAKEFQR IAAAFEQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006840401.1 | 0.0 | transcription factor MYB86 | ||||
TrEMBL | W1P3B7 | 0.0 | W1P3B7_AMBTC; Uncharacterized protein | ||||
STRING | ERN02076 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-91 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00045.155 |
Entrez Gene | 18430178 |
Publications ? help Back to Top | |||
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