PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.126
Common NameAMTR_s00045p00128140, LOC18430147
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 550aa    MW: 60283.1 Da    PI: 6.9298
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.126genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30282340259
                                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                               +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  evm_27.model.AmTr_v1.0_scaffold00045.126 282 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILVTTYEGNHNHP 340
                                               7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-33266342IPR003657WRKY domain
SuperFamilySSF1182901.27E-27274342IPR003657WRKY domain
PROSITE profilePS5081129.585276342IPR003657WRKY domain
SMARTSM007742.0E-36281341IPR003657WRKY domain
PfamPF031063.6E-26283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDRKEMRIVD TGEFYRPNSG VLLPIRVNSD DMDLSNKEER GSIEEINFFS NRTSFRQAEK  60
AGEVPESSGR NPNLESDREG SKLIDLNAGL HLMANSENGQ SLTNRWSTLD QNNRNEMAEL  120
QAELNRLNNE NQQLRGELDR MVKNYSALHM QFVSAMEQKN QQASNKKEMI DDKNGVRSPE  180
SIQEGNKIVE QQFLDLHPSI EETTQSENNA EEVVSSKKRK PVDESPERER ASQTWEPSIN  240
GNNNNKMLKQ GMMKGVEETS AMNPCRKARV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC  300
PRAYYRCTMA VGCPVRKQVQ RCAEDRTILV TTYEGNHNHP LPPAATAMAS TTSAAASMLL  360
SGPTTSTDSL HSPQFFPFLP CQSSMASLSA SAPFPTVTLD LTQNPNPLQF ARPAPLSSPF  420
ALPLPTGPHI YNQTAYGPQK LPILPSGLAP VQFGVPNQPS LTDTVSAATA AITADPNFTA  480
ALVAAITSIM GTPKNNNGNN NNNNSTNNIT TPNNNNNHSN INTNTNNTSI IGRPSSPQLP  540
QSCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22268344176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840372.10.0probable WRKY transcription factor 31
TrEMBLW1NWM90.0W1NWM9_AMBTC; Uncharacterized protein
STRINGERN020470.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-77WRKY family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]