PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00044.255 | ||||||||
Common Name | AMTR_s00044p00233260, LOC18445621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 395aa MW: 44443.7 Da PI: 10.0106 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++mg ++R +k+c +rw +yl evm_27.model.AmTr_v1.0_scaffold00044.255 4 RQRWQPEEDALLRAYVKQYGPKEWNLVSQRMGrpLHRDAKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.1 | 6.5e-11 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l v + +++G++ Wk+Ia++++ gRt+k + +w + evm_27.model.AmTr_v1.0_scaffold00044.255 59 KGSLSQEEQALVVALQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.615 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-14 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.69E-21 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-8 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 6 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.6E-14 | 7 | 68 | No hit | No description |
SMART | SM00717 | 1.8E-9 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.823 | 58 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 60 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-5 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MKERQRWQPE EDALLRAYVK QYGPKEWNLV SQRMGRPLHR DAKSCLERWK NYLKPGIKKG 60 SLSQEEQALV VALQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQAKD KQRRLQQNHH 120 HHHHHQQHSS SISSQQPPVG LSSDSSSVPV SGRYDHILET FAEKYAQQAK SCCLPPPPPP 180 PLLSDPTPLL SLNSAGTTTQ RAPAATETPA LLPSLPPWLS AAGGLKNFGA VPSVSPPPPP 240 PPPPPSVSLS LSPTSVATEC TMQAAASGVV QQLAQWCREV EEGRQAWVQQ KKEAAWRVRR 300 VEQQLESEKS RKRREKMEEV EAKIRRLREE EAAFVDRLEA DCREQLAAVQ RDAEMKEVKL 360 MEQWAAKHLK LATFVEHLSS QHPSSSCFLK DSLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-14 | 7 | 92 | 7 | 89 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-14 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
1msf_C | 5e-14 | 7 | 92 | 7 | 89 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 310 | 315 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855819.1 | 0.0 | protein rough sheath 2 homolog | ||||
TrEMBL | U5CVC8 | 0.0 | U5CVC8_AMBTC; Uncharacterized protein | ||||
STRING | ERN17286 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5096 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 1e-60 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00044.255 |
Entrez Gene | 18445621 |
Publications ? help Back to Top | |||
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