PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00044.16

Common Name

AMTR_s00044p00042560

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 337aa MW: 37646 Da PI: 8.3861

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.16	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	2.9e-32	19	71	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtpeLH++Fv+a+++LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR evm_27.model.AmTr_v1.0_scaffold00044.16 19 PRLRWTPELHHSFVHAIQKLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYR 71 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-30	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.896	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-15	18	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	19	71	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGTCGRNGAV RQYIRSKIPR LRWTPELHHS FVHAIQKLGG QDKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RGMKSDSSRH ACHASQTSKY MEEEESSIIS SVKEVPTDFD SLSNVYHPLQ 120 PKGPADNYYV QMRDSMCGSS GACGGQKGMV GIDNSLAMAS SSSPSLYSAD NYSDETTMKQ 180 QHEAVIKGLL YTKMQRDGLD SLLTPHHRDI LKYNAQAASH FQDTELNHEH GPTRKRKFDP 240 KNDNRYDPFS SQFCKEWNRK EEEEVGDCTL SLSICPRSTK GYFTKSNASS NSENSEAASS 300 HSRLSFRGGT GRSSLEKNEI NLDLSISMYA TCRKQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	20	71	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	20	71	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011627491.2	0.0	uncharacterized protein LOC18445379 isoform X1
TrEMBL	U5D6M5	0.0	U5D6M5_AMBTC; Uncharacterized protein
STRING	ERN17047	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00044.16

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]