PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00043.85

Common Name

AMTR_s00043p00225670, LOC18441025

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 456aa MW: 50008.3 Da PI: 5.6657

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00043.85	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00023	347	384	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++++ + +K + a++L +A++YIk L evm_27.model.AmTr_v1.0_scaffold00043.85 347 RKEKLGDRITALQQIVSPF-----GKTDTASVLYEAIQYIKFL 384 66788899999***998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.363	335	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-11	345	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.01E-5	345	388	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-8	349	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MAEELQNGIC SGNWWSNARS VSACSSALTD MGNLGGWSSE TGEVKGRSPS ETTVGDDHTA 60 ASVSSSSVQD SGMVMMDTGV QFALSSTDWS HALLRGSGRP DNSLQAMLPE EDLLNSRSNF 120 RQDPTPDSGH FQKEWCPKNF LVNEDSLKHM NQTFSFENRL NSGNSSGDCT VTGRSLTTSN 180 YNPGSLPYAS PSSLLQGLYE QEPLVGFQGN RLLNSPSSNY RMGVSQITTD EFGTSSWSKF 240 PDFLKSSSPP KEQQQQQSNQ LLFSNNTPFW NASPMANSIR PGLYAPSNQQ FMSQTIEEKP 300 LISNITAKTN IDEAHDSLAD LKKSASEPSF KRPRLETPSP LPTFKVRKEK LGDRITALQQ 360 IVSPFGKTDT ASVLYEAIQY IKFLHEQVNT LSTPYMKNGA PLQHHQSADK SKDTEGPKQD 420 LRSRGLCLVP ISSTYPVTSE TAVDYWTPTF GGTYR*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MAEELQNGIC SGNWWSNARS VSACSSALTD MGNLGGWSSE TGEVKGRSPS ETTVGDDHTA  60
ASVSSSSVQD SGMVMMDTGV QFALSSTDWS HALLRGSGRP DNSLQAMLPE EDLLNSRSNF  120
RQDPTPDSGH FQKEWCPKNF LVNEDSLKHM NQTFSFENRL NSGNSSGDCT VTGRSLTTSN  180
YNPGSLPYAS PSSLLQGLYE QEPLVGFQGN RLLNSPSSNY RMGVSQITTD EFGTSSWSKF  240
PDFLKSSSPP KEQQQQQSNQ LLFSNNTPFW NASPMANSIR PGLYAPSNQQ FMSQTIEEKP  300
LISNITAKTN IDEAHDSLAD LKKSASEPSF KRPRLETPSP LPTFKVRKEK LGDRITALQQ  360
IVSPFGKTDT ASVLYEAIQY IKFLHEQVNT LSTPYMKNGA PLQHHQSADK SKDTEGPKQD  420
LRSRGLCLVP ISSTYPVTSE TAVDYWTPTF GGTYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006851218.1	0.0	transcription factor bHLH123
TrEMBL	W1PXR5	0.0	W1PXR5_AMBTC; Uncharacterized protein
STRING	ERN12799	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3135	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00043.85
Entrez Gene	18441025

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]