PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00040.303 | ||||||||
Common Name | AMTR_s00040p00235500, LOC18441501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 27729 Da PI: 6.1017 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.9 | 1.1e-20 | 51 | 103 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq+e Le++F+++ +++ e++ +LA +lgL rqV vWFqNrRa++k evm_27.model.AmTr_v1.0_scaffold00040.303 51 KRRLSEEQIESLEKCFQEETKLQPERKMRLAGELGLHPRQVAVWFQNRRARWK 103 4579************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.8 | 3e-38 | 50 | 141 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray 70 +krrls+eq+++LE++F+ee+kL+perK++la eLgl+prqvavWFqnrRAR+k+kq+E+ y++Lk+++ evm_27.model.AmTr_v1.0_scaffold00040.303 50 RKRRLSEEQIESLEKCFQEETKLQPERKMRLAGELGLHPRQVAVWFQNRRARWKSKQVEHLYHSLKHQF 118 8******************************************************************** PP HD-ZIP_I/II 71 dalkeenerLekeveeLreelke 93 +++e+++L++ev +Lr+el+e evm_27.model.AmTr_v1.0_scaffold00040.303 119 HLVSKEKQKLHEEVLKLRAELRE 141 *******************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.68E-19 | 40 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 45 | 105 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 48 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.79E-18 | 50 | 106 | No hit | No description |
Pfam | PF00046 | 4.9E-18 | 51 | 103 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 52 | 112 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-5 | 76 | 85 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 80 | 103 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-5 | 85 | 101 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MMMPWNGNLL LPPYGGGGWS HSPSMAAVYN DGPGGGAMGA FLKQEGGTGR KRRLSEEQIE 60 SLEKCFQEET KLQPERKMRL AGELGLHPRQ VAVWFQNRRA RWKSKQVEHL YHSLKHQFHL 120 VSKEKQKLHE EVLKLRAELR ERERERGMTA REESGVVELS TVGGEESASA CVGNATTTNY 180 EDNGDEDDDT LMKCDCHPFS TINCRYGAGC SDDNNYLIPC LDDDGRPSQP NYYYNWDVGP 240 GCIKSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 105 | RRARWKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006851793.1 | 0.0 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 5e-35 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | W1Q052 | 0.0 | W1Q052_AMBTC; Uncharacterized protein | ||||
STRING | ERN13260 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-31 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00040.303 |
Entrez Gene | 18441501 |
Publications ? help Back to Top | |||
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