PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00040.290
Common NameAMTR_s00040p00233180, LOC18441488
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 444aa    MW: 50419.4 Da    PI: 6.2686
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.290genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.76.3e-23110218186
                                  trihelix   1 rWtkqevlaLiearr..........emeerlrrgk...................lkkplWeevskkmre 40 
                                               +Wt+++v++Li ++           +       g+                   +kk++W++vs++m+e
  evm_27.model.AmTr_v1.0_scaffold00040.290 110 KWTDNMVKLLIMVVFfvgddpcslqQ-------GEgssgdgkkksilgsgggmlQKKGKWKSVSRAMME 171
                                               7***********99866655444442.......334445555778888888999*************** PP

                                  trihelix  41 rgferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                                               +gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++ ++
  evm_27.model.AmTr_v1.0_scaffold00040.290 172 KGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVQNQSLLETMD 218
                                               *******************************559*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-20108244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEPNAMLTGG MPSGLLGLEM HPHQQQQQQA SHHLQHHIQH QHNTHPLQIA SHMASSAPLD  60
NDLASPIKHA PYLLLNNNSR GGGGGRPSDE EDAGAEDGRG KRVSPWQRMK WTDNMVKLLI  120
MVVFFVGDDP CSLQQGEGSS GDGKKKSILG SGGGMLQKKG KWKSVSRAMM EKGFYVSPQQ  180
CEDKFNDLNK RYKRVNDILG KGTACKVVQN QSLLETMDHL SSKMKEEVRK LLNSKHLFFR  240
EMCAYHSSCA GQQPCDTTDT PHHQMPQQQQ RCFHSAETTK HIEMEASKGL RMNGGDEQQH  300
QDTEEEDDEE DEEDEEDDEE EEEEEWGSSN KRQRKPMGTT MSRLMMSGEE GRECIRRKLV  360
EVKEERVRFQ AEALELEKQR FKWAKFSGKK ERELERLKLE NERNKLENER MSLLLRHKEA  420
ELDTIDSSTK RPDASTASLT GPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388397KKERELERLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006851780.10.0trihelix transcription factor GTL1
TrEMBLW1PTB30.0W1PTB3_AMBTC; Uncharacterized protein
STRINGERN132470.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-82sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]