PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00040.213 | ||||||||
Common Name | AMTR_s00040p00205710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Trihelix | ||||||||
Protein Properties | Length: 186aa MW: 19879.9 Da PI: 5.2448 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 32.1 | 2.9e-10 | 150 | 185 | 1 | 36 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW++qe+l L+e+r++m+ ++r++ k+plW+ev++ evm_27.model.AmTr_v1.0_scaffold00040.213 150 RWPRQETLRLLEVRSQMDVKFREATHKGPLWDEVAR 185 8*********************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEIGEQYGQP ELQQFLAVRS RFPAIQNPPE ILGSHGFQYQ ALLSSSFSNE REHQKLINPS 60 EFYGLLGDQL SDVHNQSVVL KAQQMITGTT NNNNSNTNVF SESPSSMCGP SSPSSIAKNH 120 GGGGGGGFGG GVIMGGGGEE GEEGGGGCGR WPRQETLRLL EVRSQMDVKF REATHKGPLW 180 DEVAR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006851703.2 | 1e-132 | trihelix transcription factor PTL | ||||
TrEMBL | W1PZZ1 | 1e-132 | W1PZZ1_AMBTC; Uncharacterized protein | ||||
STRING | ERN13170 | 1e-133 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8402 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10000.1 | 7e-14 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00040.213 |
Publications ? help Back to Top | |||
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