PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00040.203
Common NameAMTR_s00040p00200990
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 492aa    MW: 55872.4 Da    PI: 7.2091
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.203genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.14.8e-28146231187
                                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikege 68 
                                               rW++qe+l L+e+r++m+ ++r++  k+ lWeev++++ +e+g++r+ k+C+ek+enl k+ykk+keg+
  evm_27.model.AmTr_v1.0_scaffold00040.203 146 RWPRQETLRLLEVRSQMDVKFREATHKGSLWEEVARVLaEEHGYQRTGKKCREKFENLYKYYKKTKEGK 214
                                               8*************************************899**************************** PP

                                  trihelix  69 kkrtsessstcpyfdqlea 87 
                                                +r  ++ +++++f+qlea
  evm_27.model.AmTr_v1.0_scaffold00040.203 215 AGR--QDGKHYRFFTQLEA 231
                                               *98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0013143206IPR001005SANT/Myb domain
PROSITE profilePS500907.491145204IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-4145205IPR009057Homeodomain-like
PfamPF138371.7E-19146232No hitNo description
CDDcd122036.04E-21146211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGEHFGQQFP SSKPYFPSNS DQISPPQLLS YPPFHYQAFL SSSFSNEREH QKLINPSEFY  60
GLLGDQLSEV HNQSVVLKAQ QMITGNTNNN TSNTNVFSES PTSMCGPSSP SSIAKNHGGG  120
GGGFGGGMIM GGGGEEGEEG GAGCGRWPRQ ETLRLLEVRS QMDVKFREAT HKGSLWEEVA  180
RVLAEEHGYQ RTGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFTQLE AICGEIPGKI  240
PEIPAKIVPA STRNHGESPS SSDSWNWEER EEEEGGERKD MDGGLSSSSG GSEMKNKREK  300
MRRKQDSKWK KMKAYVEAQM KKLAERQEAC VEKVVQALER KERERMWREE EWRRQERERL  360
EGEYQMRARE RECMEARDRA LMAALQRITG GHQPKLHMPE PYELQEEKYK NMMLHNCSSS  420
HGERSHQACE TLILRQSMDE MPSNSDSNGV GLDQEMGNST NNSLKFLMCD ANAIGNSWDG  480
YSMNMRKHMK E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298304EKMRRKQ
2299304KMRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020527273.10.0trihelix transcription factor PTL
TrEMBLW1PZY40.0W1PZY4_AMBTC; Uncharacterized protein
STRINGERN131600.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8402716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-45Trihelix family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]