PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00040.194
Common NameAMTR_s00040p00195730
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 334aa    MW: 36589 Da    PI: 7.997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.194genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-16169219155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               + ++GVr++k  g+Wv+eIr+p    k++r++lg++  +e+Aa+a++ a  +l+g
  evm_27.model.AmTr_v1.0_scaffold00040.194 169 PVFRGVRQRK-GGKWVCEIREPH---KKTRIWLGTYTCPEMAARAHDVAVIALRG 219
                                               579******9.9*********62...25***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-11169219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-29170229IPR001471AP2/ERF domain
SMARTSM003803.7E-28170233IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-19170229IPR016177DNA-binding domain
PROSITE profilePS5103221.074170227IPR001471AP2/ERF domain
CDDcd000182.08E-27171229No hitNo description
PRINTSPR003676.4E-7171182IPR001471AP2/ERF domain
PRINTSPR003676.4E-7193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDALNATSAR FPTSSSSSHV SLDALQGPNH FNCLPEKDPL FSNAALPSHV RWGHQNSLFS  60
DETHMSSQNL SRKEPSSPNC ALCSHVSNPD HAPTATSFDK PQFPLSDPNA KTAPSKNRII  120
SMDAPAAMSE GFYTCSPSSS SSSSTTWPSS SHVPKRKAGR KKFKETRHPV FRGVRQRKGG  180
KWVCEIREPH KKTRIWLGTY TCPEMAARAH DVAVIALRGK DAALNFADSA WRLPVARTSS  240
REDIREAAKT AVKHLTAPIP ASSPVNDSCD PACQCREVTS SREALYLDEE ALFDMPGLIT  300
DLAEGLLITP PSFKGGFSWD DLDTHVDFEL WKW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625977.20.0dehydration-responsive element-binding protein 1F
TrEMBLW1PYT00.0W1PYT0_AMBTC; Uncharacterized protein
STRINGERN131510.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-56C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]