PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00039.9
Common NameAMTR_s00039p00032460
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 507aa    MW: 54471.2 Da    PI: 6.0741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00039.9genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.6e-16266312455
                                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  evm_27.model.AmTr_v1.0_scaffold00039.9 266 VHNLSERRRRDRINERMRALQELIPHC-----NKSDKASMLDEAIEYLKTLQ 312
                                             6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-21260328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.993262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-9265316No hitNo description
PfamPF000102.0E-13266312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-20266320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MNHCVPDWDM EDDPLPSSSD FQPSSGHLKK PSAPSEDELV ELVWQDGQVM MQKTSRRAPP  60
MAGKPETIVR RAEAIAGNSG FPAEPLLENP LFIQEDEMAA WLHCSPLDDF CSELFTGNVP  120
QEKTKDHHGS SHAENSGFGE GKRVTQFSQF LRRDAVTGAV GSVCGGESTV VDSNDTVTAA  180
AATAPVIGSG KWSQLQVGSS CLEMQAACEA TSSGGSGAAG GGSECRKRKG REGDEAECQS  240
EDVESFDGKK ASQRSATARR TRAAEVHNLS ERRRRDRINE RMRALQELIP HCNKSDKASM  300
LDEAIEYLKT LQLQVQMMSM GCAMPPMMLP GIQQYVTPMG MGMGVGMGMG MGMEMAAAGL  360
SRPLMPFSPM HTHPHAPILP VMHGHGASGH SSSRLPLPPL RVSATQVADT PSHQASNLPI  420
PHPQEVGPSH VGQQNQTPHN SNFLDAPYPY YMGFHPMQMP PQAMNILPYS SNTHIMQQNQ  480
PPSQSNPSAI AETSNNAKSG VGSIEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627020.20.0transcription factor PIF1 isoform X1
RefseqXP_020529187.10.0transcription factor PIF1 isoform X1
TrEMBLU5D5U50.0U5D5U5_AMBTC; Uncharacterized protein
STRINGERN157230.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-19phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]