PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00039.68 | ||||||||
Common Name | AMTR_s00039p00112210, LOC18444075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 259aa MW: 29707 Da PI: 7.212 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.7 | 5.9e-17 | 179 | 212 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C t Tp+WR gp g+ktLCnaCG++y + + evm_27.model.AmTr_v1.0_scaffold00039.68 179 CVHCLTQRTPQWRAGPLGPKTLCNACGVRYNSGR 212 ******************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-13 | 173 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.976 | 173 | 208 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-14 | 177 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-13 | 177 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.44E-12 | 178 | 235 | No hit | No description |
Pfam | PF00320 | 4.0E-14 | 179 | 212 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 179 | 204 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MDEDISCFSD LFDISDEEIG APIIFHEFGL HQNLDTADQL IFDIFEPQDF PLLQPTSIFD 60 LSDSNKSNEF CPCPENSDFC SGDSHEFIRE NRNFSSDGSH EFSQESGNFD SKDSHEFSGE 120 NCGNMQAEST EKHRKKPVTN FYLKPFIRRR TRSKRRRRAG PALSKLWRGV RGSGEVRRCV 180 HCLTQRTPQW RAGPLGPKTL CNACGVRYNS GRLFPEYRPA DSPTFIREIH SNSHRKIVEM 240 RKKRFQVSVQ LEERSSSS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 149 | 154 | RTRSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006854315.1 | 0.0 | GATA transcription factor 14 | ||||
TrEMBL | U5D2Z3 | 0.0 | U5D2Z3_AMBTC; Uncharacterized protein | ||||
STRING | ERN15782 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 6e-36 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00039.68 |
Entrez Gene | 18444075 |
Publications ? help Back to Top | |||
---|---|---|---|
|