PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00039.49 | ||||||||
Common Name | AMTR_s00039p00088760, LOC18444056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27125 Da PI: 4.4216 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r +lg+f t eeAa a++ a +kl+g evm_27.model.AmTr_v1.0_scaffold00039.49 26 AYRGVRQRT-WGKWVAEIREPNK---GDRLWLGTFATSEEAALAYDTASRKLYG 75 59****999.**********933...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-12 | 25 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-21 | 26 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.089 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-34 | 26 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-30 | 27 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-30 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAMRSSRGSK KGCMKGKGGP ENALCAYRGV RQRTWGKWVA EIREPNKGDR LWLGTFATSE 60 EAALAYDTAS RKLYGTSARL NLPEFSPFAP KSLISSGGGG NENANVSLAS VSNRNLTTSK 120 SQSEQGALEA KASAAFSEIQ NSCLLQHCSS PVKNFEPYDD ENLFCEDSIL DVDVDADLCP 180 VFKIYCDEEN QRQELLGLQD LECERISDVV HEISAPDFAA DNGGMEAGEE WMNWQEGCDP 240 SHWSWCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-18 | 27 | 83 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006854296.2 | 1e-175 | dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q8LFR2 | 9e-38 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | U5D5Y4 | 0.0 | U5D5Y4_AMBTC; Uncharacterized protein | ||||
STRING | ERN15763 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00039.49 |
Entrez Gene | 18444056 |
Publications ? help Back to Top | |||
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